YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC337.10c
Organism:	Schizosaccharomyces pombe
Length:	288 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC337.10c.

Description	E-value	Query Range	Subject Range
DRE2_ASHGO - Fe-S cluster assembly protein DRE2 OS=Ashbya gossypii GN=DRE2 PE=3 SV=1 DRE2_ASHGO - Fe-S cluster assembly protein DRE2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / ...	277.0	[0..2]	[281..4]
DRE2_EMENI - Fe-S cluster assembly protein dre2 OS=Emericella nidulans GN=dre2 PE=3 SV=1 DRE2_EMENI - Fe-S cluster assembly protein dre2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 ...	276.0	[0..5]	[281..30]
gi\|46137257, gi\|... - gi\|46137257\|ref\|XP_390320.1\| hypothetical protein FG10144.1 [Gibberella zeae PH-1], gi\|42545138\|gb\|E...	263.0	[0..5]	[281..31]
DRE2_NEUCR - Fe-S cluster assembly protein dre2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71... DRE2_NEUCR - Fe-S cluster assembly protein dre2 OS=Neurospora crassa GN=dre2 PE=3 SV=1	261.0	[0..5]	[281..29]
DRE2_COCIM - Fe-S cluster assembly protein DRE2 OS=Coccidioides immitis GN=DRE2 PE=3 SV=1 DRE2_COCIM - Fe-S cluster assembly protein DRE2 OS=Coccidioides immitis (strain RS) GN=DRE2 PE=3 SV=1	245.0	[0..6]	[281..5]
CPIN1_MOUSE - Anamorsin OS=Mus musculus GN=Ciapin1 PE=1 SV=1	241.0	[0..14]	[277..19]
DRE2_ASPOR - Fe-S cluster assembly protein dre2 OS=Aspergillus oryzae GN=dre2 PE=3 SV=1 DRE2_ASPOR - Fe-S cluster assembly protein dre2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=dre2 PE=3 S...	241.0	[0..6]	[277..27]
DRE2_DICDI - Anamorsin homolog OS=Dictyostelium discoideum GN=rsc43 PE=2 SV=1 gi\|60466740, gi\|... - gi\|66809157\|ref\|XP_638301.1\| hypothetical protein [Dictyostelium discoideum AX4], gi\|60466740\|gb\|EAL...	238.0	[0..20]	[288..30]
DRE2_MAGGR - Fe-S cluster assembly protein DRE2 OS=Magnaporthe grisea GN=DRE2 PE=3 SV=1 DRE2_MAGO7 - Fe-S cluster assembly protein DRE2 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) ...	236.0	[0..4]	[281..22]
DRE2_ASPTN - Fe-S cluster assembly protein dre2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dre2 PE=...	226.0	[0..2]	[277..26]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSVLVLTS PGFASKEESL KKVFDLIDNG ASRELQMIDR VQSQLVNLPI NRYDSVIAAI  60
   61 DDGAWSSTLG PILSQAFASV HPGGTLRVYS TADEADESFE MTALLSGWLI ESKSPWILSR 120
  121 PNQVEAVPIK LSNKNGQSAS KNKILDFLKS DKENLISGDD DQELIDEDEL LDESAHDNV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	23.552842
Match:	PF05093.4
Description:	No description for PF05093.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [180-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKVPECKPEP GKKKRACKNC TCGLREMEEH ESSKTSAQLE AVKLTDTTEV DFTEKLKSKN  60
   61 AVSSCGNCYL GDAFRCSGCP YIGMPAFNPG DTVILAENRD KMSWMADDI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.0
Match:	2fug9
Description:	Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits