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View Structure Prediction Details

Protein: SPBC1604.19c
Organism: Schizosaccharomyces pombe
Length: 658 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1604.19c.

Description E-value Query
Range
Subject
Range
gi|73961760 - gi|73961760|ref|XP_537289.2| PREDICTED: similar to Protein TRS85 homolog [Canis familiaris]
685.0 [0..39] [640..7]
gi|114672691, gi... - gi|114672693|ref|XP_001159950.1| PREDICTED: similar to Protein TRS85 homolog isoform 2 [Pan troglody...
685.0 [0..39] [640..7]
gi|40789021 - gi|40789021|dbj|BAA76856.2| KIAA1012 protein [Homo sapiens]
684.0 [0..39] [640..24]
gi|149017047, gi... - gi|157818025|ref|NP_001099630.1| hypothetical protein LOC291750 [Rattus norvegicus], gi|149017047|gb...
679.0 [0..39] [640..7]
gi|61657899, gi|... - gi|61657899|ref|NP_083767.1| hypothetical protein LOC75964 [Mus musculus], gi|26350749|dbj|BAC39011....
666.0 [0..39] [640..7]

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Predicted Domain #1
Region A:
Residues: [1-88]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIATNFITR SLSEIAPNAS QSSLHVTPSS VSNNAFGLKL RQLISDTYCP HIFIMASDDT  60
   61 ENFMKRKGFD DFASFIRPFG DRIFQSST

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.602 d.52.7 Ribosome-binding factor A, RbfA
View Download 0.507 a.60.1 SAM/Pointed domain
View Download 0.433 d.15.1 Ubiquitin-like
View Download 0.398 c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.386 a.60.1 SAM/Pointed domain
View Download 0.322 c.30.1 PreATP-grasp domain
View Download 0.317 c.84.1 Phosphoglucomutase, first 3 domains
View Download 0.310 c.26.1 Nucleotidylyl transferase
View Download 0.212 d.76.2 Description not found.
View Download 0.207 c.30.1 PreATP-grasp domain
View Download 0.201 d.360.1 Description not found.

Predicted Domain #2
Region A:
Residues: [89-227]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNSAISKETL DSRIFDNDHD SIRFVPMEAV QVPRQWKRNK AWNTENGLEN CANSRFAPGG  60
   61 DIDSFRVLSQ KLIEEWVQSG SNNYPENGFL NPILDYLKLL LSGNPVAEHE TFSHPVGCLI 120
  121 VITSHNTNPM ATVMRLFKE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.471 a.24.18 Description not found.
View Download 0.365 a.24.4 Hemerythrin
View Download 0.344 a.24.9 alpha-catenin/vinculin
View Download 0.339 a.26.1 4-helical cytokines
View Download 0.339 a.26.1 4-helical cytokines
View Download 0.325 a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.325 a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.295 a.7.3 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
View Download 0.274 c.48.1 TK C-terminal domain-like
View Download 0.269 f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore

Predicted Domain #3
Region A:
Residues: [228-337]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 INNAPFPNFI SKEILHYYLF IHDEDNNDLS NSKQIFQQMR RSLGANSHFI RLRSNYISAK  60
   61 PLDTDRYDTS SIQSLKNAPR DSMESESFCS SSDDAKPITF VTKNLRKFPI 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.853 c.47.1 Thioredoxin-like
View Download 0.767 c.47.1 Thioredoxin-like
View Download 0.691 c.47.1 Thioredoxin-like
View Download 0.673 c.47.1 Thioredoxin-like
View Download 0.630 c.47.1 Thioredoxin-like
View Download 0.540 c.47.1 Thioredoxin-like

Predicted Domain #4
Region A:
Residues: [338-579]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEWRSSLEVQ AESEQSCLPL YPLLPVEEVE GMKKFVQTML YDSIYPFMQR CVRAWEEDLT  60
   61 PQYGNLTTRL LFASKKYWSR NHSSHSQGNY DPLSLIYSSE KQESIKRKMA DFSFMLRDYK 120
  121 RAYEIYDEIR NTFSQDKAWN YLASCEEIQI ICLLMQNRNI SLKSQISYLN KWFDEMVYIY 180
  181 AVRLHSFYYT FRSVLVTSLL LSLKPAFSID FAASWLAKIL EPGPISLNPF ETSFLNTTIA 240
  241 GM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [580-658]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YSNKEHVGVT DGNRRRKAAF WFAYSAGFWR DCGHCKMAEI CWNLANRVYS KSGWESLSEH  60
   61 MLDLKPTLSE NFRVKNTFH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.847 N/A N/A a.8.9 Description not found.
View Download 0.817 N/A N/A a.8.9 Description not found.
View Download 0.797 N/A N/A a.8.11 Description not found.
View Download 0.773 N/A N/A a.29.14 Description not found.
View Download 0.761 N/A N/A a.8.9 Description not found.
View Download 0.740 N/A N/A a.5.6 Hypothetical protein MTH1615
View Download 0.667 N/A N/A a.8.3 Families 57/38 glycoside transferase middle domain
View Download 0.661 N/A N/A a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View Download 0.641 N/A N/A a.8.3 Families 57/38 glycoside transferase middle domain
View Download 0.468 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.467 N/A N/A a.159.4 Description not found.
View Download 0.408 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.378 N/A N/A a.16.1 S15/NS1 RNA-binding domain
View Download 0.358 N/A N/A a.159.4 Description not found.


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Created and Maintained by: Michael Riffle