YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC17G6.02c
Organism:	Schizosaccharomyces pombe
Length:	324 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC17G6.02c.

Description	E-value	Query Range	Subject Range
gi\|67524423, gi\|... - gi\|67524423\|ref\|XP_660273.1\| hypothetical protein AN2669.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	289.0	[0..7]	[315..30]
gi\|85099769 - gi\|85099769\|ref\|XP_960842.1\| hypothetical protein NCU04218 [Neurospora crassa OR74A] gi\|21622362, gi\|... - gi\|32405890\|ref\|XP_323558.1\| hypothetical protein [Neurospora crassa], gi\|28922370\|gb\|EAA31606.1\| pr...	283.0	[0..7]	[291..42]
gi\|42551207, gi\|... - gi\|46121911\|ref\|XP_385509.1\| hypothetical protein FG05333.1 [Gibberella zeae PH-1], gi\|42551207\|gb\|E...	278.0	[0..3]	[292..11]
gi\|83766588 - gi\|83766588\|dbj\|BAE56728.1\| unnamed protein product [Aspergillus oryzae] gi\|169768520 - gi\|169768520\|ref\|XP_001818730.1\| hypothetical protein [Aspergillus oryzae RIB40]	270.0	[0..7]	[315..21]
gi\|145014143, gi... - gi\|39968395\|ref\|XP_365588.1\| hypothetical protein MGG_02290 [Magnaporthe grisea 70-15], gb\|EAA54305....	266.0	[0..4]	[274..7]
gi\|90300648, gi\|... - gi\|90300648\|gb\|EAS30279.1\| hypothetical protein CIMG_05758 [Coccidioides immitis RS], gi\|119181260\|r... gi\|240108922 - gi\|240108922\|gb\|EER27091.1\| parasitic phase-specific protein PSP-1 [Coccidioides posadasii C735 delt...	263.0	[0..6]	[266..18]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYYDNAFGYI PAHWVTILAV ILFSIAFILH VACLAFTRKW LVIVPIIGTI GELAGWACRL  60
   61 DASYNPDDYN AFLGQIIALI IAPVFYSAQA YVLFHHIVLL YGPRFSVLSP KLYGGIFITF 120
  121 DIIALILQAA GGGVA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [136-324]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGADSGSQLQ TQGSQIMLGG ICFQLFTIVV FSILFSIFFI ALYTHHPIRP STGRREPDVP  60
   61 YTRVRTMSCN CLALATFAMV VRSVYRVIEL AQGWEGAVIT HEVWFDIFDF IPMIFTSALL 120
  121 IPSLYPALER SKLPFTEKHV SSMEYAPSEY GPSEYGPSIN DITNMSAVIY PDSFLAPKDP 180
  181 KKSFSSEEL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits