YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC3A11.03
Organism:	Schizosaccharomyces pombe
Length:	247 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC3A11.03.

Description	E-value	Query Range	Subject Range
RLMKL_SHEON - Ribosomal RNA large subunit methyltransferase K/L OS=Shewanella oneidensis (strain MR-1) GN=rlmL PE=... SO1851 - conserved hypothetical protein	125.0	[0..19]	[247..397]
RLMKL_SHESW - Ribosomal RNA large subunit methyltransferase K/L OS=Shewanella sp. (strain W3-18-1) GN=rlmL PE=3 SV...	125.0	[0..19]	[247..397]
RLMKL_SHELP - Ribosomal RNA large subunit methyltransferase K/L OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4...	124.0	[0..20]	[247..400]
RLMKL_SHEPC - Ribosomal RNA large subunit methyltransferase K/L OS=Shewanella putrefaciens (strain CN-32 / ATCC BA... gi\|124547151, gi... - gi\|124547151\|ref\|ZP_01706104.1\| putative RNA methylase [Shewanella putrefaciens 200], gi\|124509451\|g...	124.0	[0..19]	[247..397]
RLMKL_SHESM - Ribosomal RNA large subunit methyltransferase K/L OS=Shewanella sp. (strain MR-4) GN=rlmL PE=3 SV=1	124.0	[0..19]	[247..397]
RLMKL_SHESR - Ribosomal RNA large subunit methyltransferase K/L OS=Shewanella sp. (strain MR-7) GN=rlmL PE=3 SV=1	124.0	[0..19]	[247..397]
RLMKL_SHESA - Ribosomal RNA large subunit methyltransferase K/L OS=Shewanella sp. (strain ANA-3) GN=rlmL PE=3 SV=1	124.0	[0..19]	[247..397]
RLML_YERPS - Ribosomal RNA large subunit methyltransferase L OS=Yersinia pseudotuberculosis GN=rlmL PE=3 SV=1 RLMKL_YERPS - Ribosomal RNA large subunit methyltransferase K/L OS=Yersinia pseudotuberculosis serotype I (strain ... RLMKL_YERP3 - Ribosomal RNA large subunit methyltransferase K/L OS=Yersinia pseudotuberculosis serotype O:1b (stra...	123.0	[0..4]	[247..376]
gi\|68517708, gi\|... - gi\|68544593\|ref\|ZP_00584225.1\| Putative RNA methylase [Shewanella baltica OS155], gi\|68517708\|gb\|EAN...	122.0	[0..19]	[247..268]
gi\|77979207 - gi\|77979207\|ref\|ZP_00834627.1\| COG0116: Predicted N6-adenine-specific DNA methylase [Yersinia interm...	122.0	[0..16]	[247..387]

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Predicted Domain #1

Region A:
Residues: [1-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVDYLVVSY FCNRYSCWQL IIIGITGSMH GAPEFLTKVK QQYLQQVDLY RFQWVSKPTD  60
   61 WPILFNDYAQ VFLSEIVTPS AYTRAFLKSY FRFLDSIDSG HNERNEALLY TYIESLSSTY 120
  121 IPPVQYSLGE YDILIRESRH VLLREGTTGA RTWEAGMALA EYIYQHPVQS GMRVLELGAG 180
  181 TGLVSILCAK MGSIVLATDG DTKVCDGVRE NARLNNCDIN VKKLLWGVDP PEFSDIVFAS 240
  241 DVVSQES

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	2as0A
Description:	Crystal Structure of PH1915 (APC 5817): A Hypothetical RNA Methyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity	0.569065423404044	bayes_pls_golite062009
catalytic activity	0.486907672100804	bayes_pls_golite062009
methyltransferase activity	0.155495931533276	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.145822362574272	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: