YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC6G10.07
Organism:	Schizosaccharomyces pombe
Length:	780 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC6G10.07.

Description	E-value	Query Range	Subject Range
Cbp80-PA, Cbp80-PB - The gene cap binding protein 80 is referred to in FlyBase by the symbol Dmel\Cbp80 (CG7035, FBgn0022... gi\|220947496 - gi\|220947496\|gb\|ACL86291.1\| Cbp80-PA [synthetic construct]	846.0	[0..9]	[694..1]
gi\|158302409, gi... - gi\|58396536\|ref\|XP_321964.2\| ENSANGP00000013874 [Anopheles gambiae str. PEST], gi\|55234148\|gb\|EAA018... NCBP1_ANOGA - Nuclear cap-binding protein subunit 1 OS=Anopheles gambiae GN=Cbp80 PE=3 SV=4	835.0	[0..9]	[691..1]
NCBP1_DROPE - Nuclear cap-binding protein subunit 1 OS=Drosophila persimilis GN=Cbp80 PE=3 SV=1 NCBP1_DROPS - Nuclear cap-binding protein subunit 1 OS=Drosophila pseudoobscura pseudoobscura GN=Cbp80 PE=3 SV=1 gi\|54643484, gi\|... - gi\|54643484\|gb\|EAL32228.1\| GA20048 [Drosophila pseudoobscura pseudoobscura], gi\|125982811\|ref\|XP_001...	833.0	[0..9]	[694..1]
gi\|114625872 - gi\|114625872\|ref\|XP_520138.2\| PREDICTED: nuclear cap binding protein subunit 1, 80kDa [Pan troglodyt...	833.0	[0..2]	[691..112]
gi\|62088046 - gi\|62088046\|dbj\|BAD92470.1\| nuclear cap binding protein subunit 1, 80kDa variant [Homo sapiens]	824.0	[0..2]	[691..4]
gi\|42554718, gi\|... - gi\|46125901\|ref\|XP_387504.1\| hypothetical protein FG07328.1 [Gibberella zeae PH-1], gi\|42554718\|gb\|E...	818.0	[0..24]	[727..28]
gi\|73971418 - gi\|73971418\|ref\|XP_867109.1\| PREDICTED: similar to 80 kDa nuclear cap binding protein (NCBP 80 kDa s...	817.0	[0..9]	[710..1]

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Predicted Domain #1

Region A:
Residues: [1-677]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSYRGSTRP RKRTREGENY GFRPHRGNSQ ELLAARIKKD ITFLADPRGN SVAADDINYV  60
   61 AMSLSREAND PETISTILDC IQTTAFIIPV KIPHLATLII RASLRVPLIL EKAAAYFCLQ 120
  121 YFTNLNSFLY YEAKVDLRML ICMSFALQPG TLKPLFSLLA DAISKETKPS VWGDNFLRII 180
  181 LINLPYFIAA NNDLGKKDFA NEILDQCEIY VRHRKSSITL SNPLSIHDNL SEEELDLLYK 240
  241 QLILSRENDF TFPYISQPWK FFESDFVHIV PVSPSIPEWT FQPTPQQNEL PSFKRFFELF 300
  301 NNFEIRTTPD ASDVAASIFR DISVDVINHL EFNRVEAAQV LTDLDVYFTY KTFALRGTPV 360
  361 NELPNLDPSE SRWKAEDIIV EAVLGELLGS QNTTYKPVYY HSLLIECCRI APKILAPTFG 420
  421 RVIRLMYTMS SDLPLQTLDR FIDWFSHHLS NFNFHWKWNE WIPDVELDDL HPKKVFMRET 480
  481 ITRELILSYY TRISDSLPEE LRCLLGEQPS GPNFVYENET HPLYQQSSQI IEALRLHKPL 540
  541 EELDIILQSE EIQNSETSAV RLVMSCAYSL GSRSFSHALN VFEKHLNTLK HFSRKSLDSE 600
  601 IEVVDELFSF WKLQPFNAVM WLDKMLNYSI ISITSIIEWL IKQDVTIWSR SYTWSLVNTT 660
  661 FNKLAARLRR SVSNKED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1n52A
Description:	CBP80, 80KDa nuclear cap-binding protein
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [678-780]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSLINEANEE KEIVTNLLLS ALRALISENA ENIWVSHWLN LMLKYVESNF LSVKKDTIEE  60
   61 ANEPVQENTS EEQEDTKMQP VDAVDEQPSE NNQTAADATN EEK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits