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View Structure Prediction Details

Protein: SPBP19A11.02c
Organism: Schizosaccharomyces pombe
Length: 244 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBP19A11.02c.

Description E-value Query
Range
Subject
Range
gi|157767772 - gi|157767772|ref|XP_001667366.1| Hypothetical protein CBG01854 [Caenorhabditis briggsae AF16]
gi|187037627, gi... - gi|39590900|emb|CAE58680.1| Hypothetical protein CBG01854 [Caenorhabditis briggsae], gi|187037627|em...
123.0 [0..4] [244..975]
gi|33310026 - gi|33310026|gb|AAQ03243.1|AF414112_1 putative cell wall protein FLO11p [Candida albicans]
gi|68482880, gi|... - gi|68482880|ref|XP_714666.1| putative cell wall adhesin [Candida albicans SC5314], gi|46436253|gb|EA...
116.0 [0..4] [240..212]
gi|70876557 - gi|70876557|gb|EAN89996.1| hypothetical protein, conserved [Trypanosoma cruzi]
gi|71421620 - gi|71421620|ref|XP_811847.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
115.0 [0..2] [237..242]
gi|12642614 - gi|12642614|gb|AAK00311.1|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga ...
114.0 [0..11] [239..1506]
gi|76163234, gi|... - gi|76261874|ref|ZP_00769457.1| Putative Ig [Chloroflexus aurantiacus J-10-fl], gi|76163234|gb|EAO574...
112.0 [0..9] [227..1]
gi|73955449 - gi|73955449|ref|XP_858007.1| PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A ...
108.0 [0..101] [241..1707]
TCNA_TRYCR - Sialidase OS=Trypanosoma cruzi GN=TCNA PE=2 SV=1
108.0 [0..4] [240..811]

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Predicted Domain #1
Region A:
Residues: [1-95]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFSVLCKFL LLVTAVMAQT EYTPGFTTDV ATTVTPTPLP SANVTTTSFS SASTETSTHS  60
   61 VTSTNITSIV PPPSTSHNST TTTVPPTTSM NTTTT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [96-244]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPPTTSLNTT TTTAPPTTHV NSTTTVVPPT THVNTTTVVP PTTHVNTTTV VPPTTHANTT  60
   61 SFVPTTTESS IHPITTGFYN TTFTTGYFNT SVTSVAVHNS TTVFPTSVPI VNTTSFNVTT 120
  121 IPSSAVHYAS PSGLLALVVM LISAFAFLA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.17
Match: 2j63A
Description: No description for 2j63A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle