YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC19A8.06
Organism:	Schizosaccharomyces pombe
Length:	397 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC19A8.06.

Description	E-value	Query Range	Subject Range
gi\|18310052, gi\|... - gi\|18310052\|ref\|NP_561986.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens st...	234.0	[0..73]	[357..2]
FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima GN=fabG PE=3 SV=1 FABG_THEMA - 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / D...	233.0	[0..71]	[356..1]
gi\|168210762, gi... - gi\|170711222\|gb\|EDT23404.1\| 3-oxoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens B st... gi\|110675446, gi... - gi\|110800799\|ref\|YP_695772.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens A... gi\|170660709, gi... - gi\|170660709\|gb\|EDT13392.1\| 3-oxoacyl- reductase [Clostridium perfringens E str. JGS1987], gi\|168207...	232.0	[0..73]	[357..2]
gi\|146296617, gi... - gi\|82501013\|ref\|ZP_00886394.1\| 3-oxoacyl-(acyl-carrier-protein) reductase [Caldicellulosiruptor sacc...	232.0	[0..70]	[357..1]
gi\|53688164 - gi\|53688164\|ref\|ZP_00110036.2\| COG1028: Dehydrogenases with different specificities (related to shor...	231.0	[0..43]	[356..79]
gi\|110803752, gi... - gi\|110803752\|ref\|YP_698460.1\| 3-ketoacyl-(acyl-carrier-protein) reductase [Clostridium perfringens S...	229.0	[0..73]	[357..2]
gi\|53610584 - ref\|ZP_00342080.1\| COG1028: Dehydrogenases with different specificities (related to short-chain alco... gi\|67085961, gi\|... - gi\|67156772\|ref\|ZP_00418269.1\| Short-chain dehydrogenase/reductase SDR [Azotobacter vinelandii AvOP]...	226.0	[0..40]	[356..7]
gi\|158320488, gi... - gi\|158320488\|ref\|YP_001512995.1\| 3-oxoacyl-(acyl-carrier-protein) reductase [Alkaliphilus oremlandii...	226.0	[0..71]	[357..1]
gi\|255313843 - gi\|255313843\|ref\|ZP_05355426.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255516524 - gi\|255516524\|ref\|ZP_05384200.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255649624 - gi\|255649624\|ref\|ZP_05396526.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|254974717 - gi\|254974717\|ref\|ZP_05271189.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile QC... gi\|255092105 - gi\|255092105\|ref\|ZP_05321583.1\| 3-oxoacyl-[acyl-carrier protein] reductase [Clostridium difficile CI... gi\|90575404, gi\|... - gi\|90575404\|ref\|ZP_01231888.1\| hypothetical protein CdifQ_02001165 [Clostridium difficile QCD-32g58]...	226.0	[0..70]	[357..1]
gi\|75908644, gi\|... - gi\|75908644\|ref\|YP_322940.1\| Short-chain dehydrogenase/reductase SDR [Anabaena variabilis ATCC 29413...	225.0	[0..43]	[356..9]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVVCSCLLP TPSTDFVNQR NMPIPIIAHI AQFKYEHLIT HWAQYTKAAI AVSTIAAFKF  60
   61 WTSGRTTT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.69897
Match:	2z5lA
Description:	No description for 2z5lA was found.

Predicted Domain #2

Region A:
Residues: [69-397]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WERKMNGMVV MVTGGSSGIG QVVVEKLASL GAQVVILLRT EPDQFTVDYI MDLRKRTKNQ  60
   61 LIYTEVCDLS SMLSVRKFAT KWIDCTPIRR LDMIVLCSGV LLPPFMDRQT TEEGVELQWA 120
  121 TNFLGPYQLL RILRPVIYGQ PGHREVRIVA ATCSSYILGN IDFNDLDLSN HPYPRKSPWK 180
  181 VVGNAKLALM TYLYDFQKKA EAHERPDKMP CNLHTIMANP GVVRTPGFRR VVSFGKVWGL 240
  241 FLYLLLWPFW WLLLKGTIHG AQSFFHAICS PEFASITQPV LVNECSIVEY SRKEITDPEF 300
  301 AEKLIKAADA QIDEVEKQYK KKKIKKSKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.69897
Match:	2p68A
Description:	No description for 2p68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits