YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC16H5.08c
Organism:	Schizosaccharomyces pombe
Length:	618 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC16H5.08c.

Description	E-value	Query Range	Subject Range
gi\|48855897 - gi\|48855897\|ref\|ZP_00310055.1\| COG1123: ATPase components of various ABC-type transport systems, con... gi\|110636885, gi... - gi\|110636885\|ref\|YP_677092.1\| ABC transporter, ATP-binding protein [Cytophaga hutchinsonii ATCC 3340...	437.0	[0..75]	[617..13]
gi\|109626138, gi... - gi\|110668391\|ref\|YP_658202.1\| ABC-type dipeptide/oligopeptide/nickel transport systems, ATP-binding ...	437.0	[0..72]	[616..1]
gi\|39573949, gi\|... - gi\|42522753\|ref\|NP_968133.1\| ABC-type dipeptide transport system, ATPase component [Bdellovibrio bac...	435.0	[0..71]	[614..2]
gi\|88864866, gi\|... - gi\|89055317\|ref\|YP_510768.1\| ABC transporter related [Jannaschia sp. CCS1], gi\|88864866\|gb\|ABD55743....	435.0	[0..75]	[616..8]
gi\|49610471, gi\|... - gi\|50119945\|ref\|YP_049112.1\| ABC transporter, ATP-binding protein [Pectobacterium atrosepticum SCRI1...	433.0	[0..72]	[613..1]
gi\|115258954, gi... - gi\|116254306\|ref\|YP_770144.1\| putative ATP-binding component of ABC transporter [Rhizobium leguminos...	433.0	[0..68]	[616..5]
gi\|98659782, gi\|... - gi\|98659782\|dbj\|GAA02846.1\| unnamed protein product [Pelotomaculum thermopropionicum SI], gi\|1476778...	432.0	[0..75]	[606..1]
gi\|48785352, gi\|... - gi\|91780211\|ref\|YP_555418.1\| peptide/opine/nickel ABC transporter ATPase [Burkholderia xenovorans LB...	430.0	[0..64]	[613..3]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKSASKLK REAKKAERLA AKGESVKPSK KNGTKNGKDK EVDGVTKDLS ELSTSDPIFE  60
   61 RSASGVLTSQ PMSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.0
Match:	2hydA
Description:	No description for 2hydA was found.

Predicted Domain #2

Region A:
Residues: [75-484]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIKIDSYTLS FHGRLLIENA TIELNHGQRY GLLGDNGSGK STFLESVAAR DVEYPEHIDS  60
   61 YLLNAEAEPS DVNAVDYIIQ SAKDKVQKLE AEIEELSTAD DVDDVLLESK YEELDDMDPS 120
  121 TFEAKAAMIL HGLGFTQEMM AKPTKDMSGG WRMRVALSRA LFIKPSLLLL DEPTNHLDLE 180
  181 AVVWLENYLA KYDKILVVTS HSQDFLNNVC TNIIDLTSKK QLVYYGGNFD IYMRTKEENE 240
  241 TNQMKAYLKQ QEEIAHIKKF IASAGTYANL VRQAKSKQKI IDKMEAAGLV EKPEPPRQFS 300
  301 FEFDEVRKLP PPIIAFNDVA FSYDGNLDHA LYRDLSFGID MDSRVAIVGK NGTGKSTLLN 360
  361 LITGLLIPIE GNVSRYSGLK MAKYSQHSAD QLPYDKSPLE YIMDTYKPKF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	2iw3A
Description:	No description for 2iw3A was found.

Predicted Domain #3

Region A:
Residues: [485-618]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PERELQQWRS VLGKFGLSGL HQTSEIRTLS DGLKSRVVFA ALALEQPHIL LLDEPTNHLD  60
   61 ITSIDALAKA INVWTGGVVL VSHDFRLIGQ VSKELWEVKD KKVVKLDCSI EEYKKSMAKE 120
  121 VQSRDTTAKV KHLI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	2qi9C
Description:	No description for 2qi9C was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits