YRC Public Data Repository - Protein Structure Prediction

Protein:	gyp10
Organism:	Schizosaccharomyces pombe
Length:	373 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gyp10.

Description	E-value	Query Range	Subject Range
gi\|114565462 - gi\|114565462\|ref\|XP_514012.2\| PREDICTED: hypothetical protein [Pan troglodytes]	303.0	[0..6]	[362..693]
gi\|148236462, gi... - gi\|27694686\|gb\|AAH43775.1\| MGC52980 protein [Xenopus laevis], gi\|148236462\|ref\|NP_001079480.1\| hypot...	294.0	[0..1]	[362..496]
gi\|109498086 - gi\|109498086\|ref\|XP_222799.4\| PREDICTED: similar to RAB GTPase activating protein 1-like isoform a [...	294.0	[0..6]	[362..507]
gi\|73960568 - gi\|73960568\|ref\|XP_537185.2\| PREDICTED: similar to RAB GTPase activating protein 1-like isoform 1 [C...	293.0	[0..6]	[362..507]
gi\|60360530 - gi\|60360530\|dbj\|BAD90509.1\| mKIAA4104 protein [Mus musculus]	289.0	[0..1]	[368..525]

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Predicted Domain #1

Region A:
Residues: [1-292]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKEIKQLK NEIKIALLNS DVETLSHIGK EGHGFLMKSL RKSVWVSLCG LSCRHRMECL  60
   61 SRSTSQSSYA DQNQVHLDSE RSFFQYKLNP FLLRKHRSQL TKLLSVVFKH YPELCYYQGL 120
  121 HDIAQILLLT LPFSHALPLM EHLVFYRLRD FMLPTLDGTV KQLQLILAVI KARDPTLYEY 180
  181 LIKADIQCYF ALSWLITWFA HDVSDISVVC RLFDFFISSH PLTVVYTCAQ VVLDNRTSII 240
  241 ELLWDNSGAD LLHSYLCKLP ASINVNQLIK NTCATISAVP FSSLPLDRYQ IS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.522879
Match:	2qq8A
Description:	No description for 2qq8A was found.

Predicted Domain #2

Region A:
Residues: [293-373]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYSCLRNTGD PWEYMSRSNG LLLFRLQLAE LQEEKHKPGT KVPAVFLQEN IFNGCNMLAA  60
   61 ITVIGIGIVA SQLIPKSTSN S

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits