YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC24B10.02c
Organism:	Schizosaccharomyces pombe
Length:	449 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC24B10.02c.

Description	E-value	Query Range	Subject Range
gi\|28926201, gi\|... - gi\|32420519\|ref\|XP_330703.1\| hypothetical protein [Neurospora crassa], gi\|28926201\|gb\|EAA35184.1\| hy... gi\|85112830 - gi\|85112830\|ref\|XP_964420.1\| hypothetical protein NCU03267 [Neurospora crassa OR74A]	425.0	[0..7]	[440..204]
gi\|39965347, gi\|... - gi\|39965347\|ref\|XP_365092.1\| hypothetical protein MGG_09937 [Magnaporthe grisea 70-15], gb\|EAA46716....	415.0	[0..7]	[440..118]
gi\|42545074, gi\|... - gi\|46108416\|ref\|XP_381266.1\| hypothetical protein FG01090.1 [Gibberella zeae PH-1], gi\|42545074\|gb\|E...	411.0	[0..5]	[440..215]
gi\|88186149, gi\|... - gi\|88186149\|gb\|EAQ93617.1\| hypothetical protein CHGG_01852 [Chaetomium globosum CBS 148.51], gi\|1161...	382.0	[0..7]	[440..197]
gi\|91089195 - gi\|91089195\|ref\|XP_974485.1\| PREDICTED: similar to CG33156 CG33156-PE [Tribolium castaneum]	381.0	[0..33]	[433..104]
gi\|238881008 - gi\|238881008\|gb\|EEQ44646.1\| conserved hypothetical protein [Candida albicans WO-1] gi\|46438306, gi\|... - gi\|68478731\|ref\|XP_716634.1\| hypothetical protein CaO19.7393 [Candida albicans SC5314], gi\|46438306\|... orf19.7393 - orf19.7393 CGDID:CAL0004835 Assembly 19, Contig19-2513 (124431, 122653) CDS, reverse complemented, t...	380.0	[0..30]	[418..139]
gi\|119113331, gi... - gi\|119113331\|ref\|XP_309524.3\| ENSANGP00000012587 [Anopheles gambiae str. PEST], gi\|116131739\|gb\|EAA0...	380.0	[0..23]	[436..97]
gi\|108884490, gi... - gi\|157127063\|ref\|XP_001654785.1\| poly(p)/atp nad kinase [Aedes aegypti], gi\|108884490\|gb\|EAT48715.1\|...	378.0	[0..49]	[436..6]
gi\|74225047 - gi\|74225047\|dbj\|BAE38227.1\| unnamed protein product [Mus musculus]	377.0	[0..9]	[422..35]

Back

Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATKVEEINK LKKKNLHFRQ CSADSLSNSS MQFDLSGLNT PVGELATSNL PSPAHPPFGE  60
   61 LHQESRTSNS SAMHIENVVA SRLMYNEVAN GSFA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [95-449]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LEPKNILVVT KPRKHSLVYK TAEITKYILT IGTPETKVYV DMRLARSKRF SAHNIAKEAN  60
   61 TDIDRIKYWN PYICLIKPSI FDLAITIGDN STLLYTSWLF QKIGPPVLSF SDDDVPGFLT 120
  121 HFSLSNYQQH LYQVLTQNVS LRFCSRLQCS FHKYDEKTKQ YSLASTTYSL DEILISRGEH 180
  181 PFISNLNVYN NSELMTVVQA DGLVVATPTG STNISANAGG SLVHPALNAI LVTPVCPHTL 240
  241 SFRPIILPDY NVLNVEIPLD SRSSAFFSVD RHESVEMHRG DYLSIVTSHY PFTTIQNPGY 300
  301 QWTKVLEDKF NWNVRERQKP FSRKPSLSDV KDTSDDKFDI TDNSYCREFS ADIDG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	90.221849
Match:	2an1A
Description:	Structural Genomics, The crystal structure of a putative kinase from Salmonella typhimurim LT2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits