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View Structure Prediction Details

Protein: SPBC16A3.19
Organism: Schizosaccharomyces pombe
Length: 272 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC16A3.19.

Description E-value Query
Range
Subject
Range
gi|8163670 - gi|8163670|gb|AAF73793.1|AF154024_1 surface protein PspC [Streptococcus pneumoniae]
155.0 [0..6] [270..156]
gi|70878483 - gi|70878483|gb|EAN91735.1| trans-sialidase, putative [Trypanosoma cruzi]
gi|71649745 - gi|71649745|ref|XP_813586.1| trans-sialidase [Trypanosoma cruzi strain CL Brener]
152.0 [0..2] [269..753]

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Predicted Domain #1
Region A:
Residues: [1-116]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRGTRSST AAEQKRQEDV NKESNMNDSV TEWSVLEETL LLKAICRGLR PVGIEKNFYM  60
   61 IGILREIRDG CKRSTIKAQD VWNKLGTLYN LKEFEELEAP GNEEVKAKEK RIKSPD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 46.0
Match: PF07904.4
Description: No description for PF07904.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [117-272]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKDFKLPKDI LKVKEKSEKP LETSQKVEIE TVETKPGEPE VKQETNLQKE KKESKVKLES  60
   61 KEEKISRNLR SSSRSISPVT EQPQSPKIQP VIPEKKEKSE KKESSMTLRK RSVSPSSQNT 120
  121 ARSPKRMATE PIEPASSPAA SNQAIRRSSR SRRPPT

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.09
Match: 2j63A
Description: No description for 2j63A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle