YRC Public Data Repository - Protein Structure Prediction

Protein:	sec26
Organism:	Schizosaccharomyces pombe
Length:	940 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sec26.

Description	E-value	Query Range	Subject Range
gi\|42544347, gi\|... - gi\|46111797\|ref\|XP_382956.1\| hypothetical protein FG02780.1 [Gibberella zeae PH-1], gi\|42544347\|gb\|E...	785.0	[0..2]	[939..7]
gi\|39977951, gi\|... - gi\|39977951\|ref\|XP_370363.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA55203....	782.0	[0..2]	[939..7]
gi\|116195722, gi... - gi\|88180372\|gb\|EAQ87840.1\| conserved hypothetical protein [Chaetomium globosum CBS 148.51], gi\|11619...	777.0	[0..2]	[939..7]
gi\|40747139, gi\|... - gi\|67518019\|ref\|XP_658781.1\| hypothetical protein AN1177.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	775.0	[0..2]	[939..7]
gi\|85085318 - gi\|85085318\|ref\|XP_957481.1\| coatomer beta subunit [Neurospora crassa OR74A] gi\|28918573, gi\|... - gi\|40882217\|emb\|CAF06042.1\| probable coatomer complex beta chain [Neurospora crassa], gi\|32406288\|re...	773.0	[0..2]	[939..6]
gi\|70995412, gi\|... - gi\|70995412\|ref\|XP_752462.1\| Coatomer subunit beta [Aspergillus fumigatus Af293], gi\|66850097\|gb\|EAL... gi\|159131217 - gi\|159131217\|gb\|EDP56330.1\| Coatomer subunit beta, putative [Aspergillus fumigatus A1163]	771.0	[0..2]	[939..7]
gi\|114197239, gi... - gi\|115491503\|ref\|XP_001210379.1\| coatomer beta subunit [Aspergillus terreus NIH2624], gi\|114197239\|g...	758.0	[0..2]	[939..7]
gi\|83773988 - gi\|83773988\|dbj\|BAE64113.1\| unnamed protein product [Aspergillus oryzae] gi\|169781566 - gi\|169781566\|ref\|XP_001825246.1\| hypothetical protein [Aspergillus oryzae RIB40]	758.0	[0..2]	[939..7]
gi\|111056507 - gi\|111056507\|gb\|EAT77627.1\| hypothetical protein SNOG_15084 [Phaeosphaeria nodorum SN15]	755.0	[0..2]	[939..7]
gi\|90301825, gi\|... - gi\|90301825\|gb\|EAS31456.1\| hypothetical protein CIMG_06935 [Coccidioides immitis RS], gi\|119184223\|r...	746.0	[0..2]	[939..7]

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Predicted Domain #1

Region A:
Residues: [1-625]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCWTLVQQD FLEAPSVDAL KTSLESKNDY VKISAMKTIL RVVINGDSLP SILMHVIRFV  60
   61 MPSRNKELKK LLYYYWEVCP KYNNDGTMKQ EMILACNSFR NDLQHPNEFI RGATLRFLCK 120
  121 LKEPELLDPL IPTVRQCLEH RHAYVRKNAI LAVFSIYQVS NHLIPDAASL AEDFLAAESE 180
  181 GTCKRNALIV LFTIDPEKAK AWLLANFEQI PSLNASSLLV IIEFIRKVVL TKADGLEKLR 240
  241 FQSLLVSLTA TNNSSVVFEA ATSVINVFPD AESLKLAASR LLALADREAD NNAKLIMLDR 300
  301 ISQLAARDKS ILEDLITDVI PFLSSSDFDV CEKAISIIMG LVSSRNVEDI LNHFQKELTK 360
  361 SNGETEKDDG RRRALTKAIH SCAINFPHTA ATAIQYLLSH ISDFQSKSAS SVLSFIKEVM 420
  421 EKFPDLRSSN ITKLLLSLKE LRAGKIFRGV IWIAGEYCLT EDDIRVAWKS IRASLGEVPI 480
  481 LASEEQLLKD VSNVPEDDLL IDISAPASTS RKVLPDGTYA TESAVTSEAL SAARLEAVKA 540
  541 SKKPPLRTQI LSGDYYLAAV LASALTKLVM RFARLSFDKE RLNALKAEAC LIMTSIIRVG 600
  601 QSKFVKYTID DDSVERIMNC IRAIY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.522879
Match:	1w63B
Description:	AP1 clathrin adaptor core
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [626-940]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFEELPEFQT VFLDDMRKAF SSLVAQSDKR QKEADLLVNG SDAVQADELL NIRQFQRVIE  60
   61 EKQDLNFESD IIQATNDGMV VEDLASKLDH IVQLAGFTDP VYCEAYVKIQ QFDIILDILL 120
  121 VNRTDTTLQN LSVDLATLGD LKVVERPPPM NLGPHAFKSV QATVKVSSTE SAVIFGNIVY 180
  181 GGKASDEDKI VVLNGIPVNI IDYIKPAFIP ESQFRSMWTE FEWENKVDIS SNEDISLYDF 240
  241 LHKIMKKTNM NCLTPDASLR GDCGFLSANL YACSIFGEDA LMSLSVEKSV SGPISGHVRI 300
  301 RSKTQGIALS LGAFV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.522879
Match:	1pzdA
Description:	Structural Identification of a conserved appendage domain in the carboxyl-terminus of the COPI gamma-subunit.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits