YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC825.01
Organism:	Schizosaccharomyces pombe
Length:	822 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC825.01.

Description	E-value	Query Range	Subject Range
gi\|48855897 - gi\|48855897\|ref\|ZP_00310055.1\| COG1123: ATPase components of various ABC-type transport systems, con... gi\|110636885, gi... - gi\|110636885\|ref\|YP_677092.1\| ABC transporter, ATP-binding protein [Cytophaga hutchinsonii ATCC 3340...	442.0	[0..272]	[822..10]
gi\|56478652, gi\|... - gi\|56478652\|ref\|YP_160241.1\| ABC transporter, ATP-binding protein [Aromatoleum aromaticum EbN1], gi\|...	442.0	[0..274]	[821..39]
gi\|69275750, gi\|... - gi\|69275750\|ref\|ZP_00611498.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-termin...	439.0	[0..276]	[820..19]
gi\|15158466, gi\|... - gi\|15890270\|ref\|NP_355942.1\| hypothetical protein AGR_L_318 [Agrobacterium tumefaciens str. C58], gi... gi\|25384809 - pir\|\|E98150 hypothetical ABC transporter ATP-binding protein in bcr 5'region [imported] - Agrobacter...	435.0	[0..246]	[820..16]
gi\|115258954, gi... - gi\|116254306\|ref\|YP_770144.1\| putative ATP-binding component of ABC transporter [Rhizobium leguminos...	430.0	[0..274]	[820..11]
gi\|145306185, gi... - gi\|145596848\|ref\|YP_001161145.1\| oligopeptide/dipeptide ABC transporter, ATPase subunit [Salinispora...	427.0	[0..279]	[820..32]
gi\|87309559, gi\|... - gi\|87309559\|ref\|ZP_01091694.1\| ABC-type dipeptide transport system, ATPase component [Blastopirellul...	427.0	[0..271]	[822..1]
gi\|15076145 - gi\|15076145\|emb\|CAC47698.1\| Peptide transport ATP-binding protein [Sinorhizobium meliloti 1021] gi\|15966872 - gi\|15966872\|ref\|NP_387225.1\| putative peptide transport system ATP-binding ABC transporter protein [...	427.0	[0..265]	[820..17]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARGKRSTQR DADLELESLQ SEIESESPQP VTKSKAKKNK KKLNKASAFN SDNDSNYDLK  60
   61 PEDDEVDEEV VPVKKKPSKK SKKAKANAFE AFADEQSVEE EEEEDSEKPV RKNKKSSKKA 120
  121 SPKNAFDALA DDMDDLSLDE EESESSEKSK KKKKKSKSKD DGSEALDDGD IESSEKDKKK 180
  181 KK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.39794
Match:	1f2tB
Description:	CRYSTAL STRUCTURE OF ATP-FREE RAD50 ABC-ATPASE
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [183-729]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSKENDDAPK KDRKTRKKEE KARKLASMLE SENKDNDANA APLNKTDAFK DGLPSGRLIF  60
   61 AYASGQKVAP DGSNPADGIT VTGNLLSPPN SRDLQVEKLS VSAWGKLLIK DSELNLINGR 120
  121 RYGLIAPNGS GKSTLLHAIA CGLIPTPSSL DFYLLDREYI PNELTCVEAV LDINEQERKH 180
  181 LEAMMEDLLD DPDKNAVELD TIQTRLTDLE TENSDHRVYK ILRGLQFTDE MIAKRTNELS 240
  241 GGWRMRIALA RILFIKPTLM MLDEPTNHLD LEAVAWLEEY LTHEMEGHTL LITCHTQDTL 300
  301 NEVCTDIIHL YHQKLDYYSG NYDTFLKVRA ERDVQLAKKA RQQEKDMAKL QNKLNMTGSE 360
  361 QQKKAKAKVK AMNKKLEKDK QSGKVLDEEI IQEKQLVIRF EDCGGGIPSP AIKFQDVSFN 420
  421 YPGGPTIFSK LNFGLDLKSR VALVGPNGAG KTTLIKLILE KVQPSTGSVV RHHGLRLALF 480
  481 NQHMGDQLDM RLSAVEWLRT KFGNKPEGEM RRIVGRYGLT GKSQVIPMGQ LSDGQRRRVL 540
  541 FAFLGMT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.09691
Match:	2iw3A
Description:	No description for 2iw3A was found.

Predicted Domain #3

Region A:
Residues: [730-822]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPHILLLDEP TNALDIDTID ALADALNNFD GGVVFITHDF RLIDQVAEEI WIVQNGTVKE  60
   61 FDGEIRDYKM MLKQQIAKER EEERRIELEK QKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.221849
Match:	1yqtA
Description:	RNase-L Inhibitor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits