YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC800.11
Organism:	Schizosaccharomyces pombe
Length:	389 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC800.11.

Description	E-value	Query Range	Subject Range
gi\|237707382, gi... - gi\|237707382\|ref\|ZP_04537863.1\| pyrimidine-specific ribonucleoside hydrolase rihA [Escherichia sp. 3... gi\|26107024, gi\|... - gi\|26246625\|ref\|NP_752665.1\| Hypothetical protein ybeK [Escherichia coli CFT073], gi\|26107024\|gb\|AAN... gi\|91209692, gi\|... - gi\|91209692\|ref\|YP_539678.1\| hypothetical protein YbeK [Escherichia coli UTI89], gi\|91071266\|gb\|ABE0...	348.0	[0..19]	[358..8]
RIHA_ECO45 - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN... RIHA_ECOK1 - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli O1:K1 / APEC GN=rihA PE=3 SV=1 gi\|227838462, gi... - gi\|227884376\|ref\|ZP_04002181.1\| ribosylpyrimidine nucleosidase [Escherichia coli 83972], gi\|22783846... RIHA_ECOL6 - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 70... gi\|162138473 - gi\|162138473\|ref\|YP_539678.2\| ribonucleoside hydrolase 1 [Escherichia coli UTI89] RIHA_ECOL6 - Pyrimidine-specific ribonucleoside hydrolase rihA OS=Escherichia coli O6 GN=rihA PE=3 SV=2	343.0	[0..23]	[358..1]
gi\|88191852 - gi\|88191852\|pdb\|1YOE\|A Chain A, Crystal Structure Of A The E. Coli Pyrimidine Nucleoside Hydrolase Y...	343.0	[0..23]	[358..12]
RIHA_ECOLI, YBEK... - (P41409) Hypothetical protein ybeK, Pyrimidine-specific ribonucleoside hydrolase rihA (EC 3.2.-.-) (... RIHA_ECOBW - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli (strain K12 / MC4100 / BW2952)... EG12701 - ribonucleoside hydrolase 1 / Ribonucleoside hydrolase, pyrimidine specific gi\|170080230, gi... - gi\|170080331\|ref\|YP_001729651.1\| ribonucleoside hydrolase 1 [Escherichia coli str. K-12 substr. DH10... gi\|194439885, gi... - gi\|83584753\|ref\|ZP_00923416.1\| COG1957: Inosine-uridine nucleoside N-ribohydrolase [Escherichia coli... gi\|4062271, gi\|8... - gi\|89107520\|ref\|AP_001300.1\| ribonucleoside hydrolase 1 [Escherichia coli str. K-12 substr. W3110], ... gi\|253972630, gi... - gi\|254160729\|ref\|YP_003043837.1\| ribonucleoside hydrolase 1 [Escherichia coli B str. REL606], gi\|253... gi\|253976824, gi... - gi\|254287517\|ref\|YP_003053265.1\| ribonucleoside hydrolase 1 [Escherichia coli BL21(DE3)], gi\|2539768... gi\|242376421, gi... - gi\|251784148\|ref\|YP_002998452.1\| hypothetical protein B21_00606 [Escherichia coli BL21], gi\|24237642... EG12701 - ribonucleoside hydrolase 1 / Ribonucleoside hydrolase, pyrimidine specific	343.0	[0..23]	[358..1]
RIHA_SALPA - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella paratyphi A (strain ATCC 9150 / SARB... RIHA_SALPA - Pyrimidine-specific ribonucleoside hydrolase rihA OS=Salmonella paratyphi A GN=rihA PE=3 SV=1 RIHA_SALPK - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella paratyphi A (strain AKU_12601) GN=ri...	343.0	[0..23]	[358..1]
gi\|146277154, gi... - gi\|83369561\|ref\|ZP_00914414.1\| inosine-uridine preferring nucleoside hydrolase [Rhodobacter sphaeroi...	342.0	[0..22]	[357..2]
RIHA_SHESM - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shewanella sp. (strain MR-4) GN=rihA PE=3 SV=1	342.0	[0..23]	[362..1]
gi\|124499689, gi... - gi\|124529686\|ref\|ZP_01700593.1\| Purine nucleosidase [Escherichia coli B], gi\|124499689\|gb\|EAY47173.1... gi\|188490046, gi... - gi\|75511296\|ref\|ZP_00733990.1\| COG1957: Inosine-uridine nucleoside N-ribohydrolase [Escherichia coli... RIHA_ECOLC - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 /...	342.0	[0..23]	[358..1]
gi\|168786501, gi... - gi\|189373662\|gb\|EDU92078.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H... gi\|168802439, gi... - gi\|189375581\|gb\|EDU93997.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H... gi\|195939389 - gi\|195939389\|ref\|ZP_03084771.1\| ribonucleoside hydrolase 1 [Escherichia coli O157:H7 str. EC4024] gi\|208725560, gi... - gi\|208805759\|ref\|ZP_03248096.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O1... gi\|208815054, gi... - gi\|208815054\|ref\|ZP_03256233.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O1... gi\|208822967, gi... - gi\|208822967\|ref\|ZP_03263285.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O1... RIHA_ECO5E - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC)... gi\|217320943, gi... - gi\|217324722\|ref\|ZP_03440806.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O1... gi\|188013882, gi... - gi\|188013882\|gb\|EDU52004.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H... gi\|13360148, gi\|... - gi\|15829944\|ref\|NP_308717.1\| ribonucleoside hydrolase 1 [Escherichia coli O157:H7 str. Sakai], gi\|13... gi\|189354849, gi... - gi\|189354849\|gb\|EDU73268.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H... gi\|189365377, gi... - gi\|189365377\|gb\|EDU83793.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H... gi\|189363460, gi... - gi\|189363460\|gb\|EDU81879.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H... gi\|187767178, gi... - gi\|187767178\|gb\|EDU31022.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H... gi\|168779142, gi... - gi\|189003131\|gb\|EDU72117.1\| inosine-uridine preferring nucleoside hydrolase [Escherichia coli O157:H... gi\|254591215, gi... - gi\|254791815\|ref\|YP_003076652.1\| ribonucleoside hydrolase 1 [Escherichia coli O157:H7 str. TW14359],... RIHA_ECO57 - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli O157:H7 GN=rihA PE=3 SV=1 gi\|209776950, gi... - pir\|\|E85565 probable tRNA synthetase ybeK [imported] - Escherichia coli (strain O157:H7, substrain ... gi\|194417295, gi... - gi\|83569108\|ref\|ZP_00920568.1\| COG1957: Inosine-uridine nucleoside N-ribohydrolase [Shigella dysente... gi\|12513558, gi\|... - gi\|15800365\|ref\|NP_286377.1\| ribonucleoside hydrolase 1 [Escherichia coli O157:H7 EDL933], gi\|125135...	342.0	[0..23]	[358..1]
RIHA_SHIB3 - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shigella boydii serotype 18 (strain CDC 3083-94...	342.0	[0..23]	[358..1]

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Predicted Domain #1

Region A:
Residues: [1-389]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHFAKLGAIG LLGSIICAYA ASAASKVIID NDGLTDLQVL FALQAKQQIL GVTAIYGDYT  60
   61 LDDSLFLASD VLSTGNLTYC IPSFAGAAQP LLRTNNTFQI WQELYGSYVW QGYWQPEYET 120
  121 ANTNNESYIY NTQISAAQFI IDMVKANPNE ITIVAAGPMT NLAIALSIWP DLAKNTKSLV 180
  181 IMGGYVDSQI AQVTGGDFLN DMYSDFNLFM EPEAAQTAIT ADWPELIIAG NITSQVYPSQ 240
  241 SLYNGIIARA GGMANIESDS GLSYAKQFVG NGTLPSGSFP FWDEVASAIA AWPEIVNSSY 300
  301 DAYVSVDTAY DSPFYGSLRM VPADLVPKKG VRTAKASMIT GINVAMFYQK IYDSLTAEYS 360
  361 SYCMNGTIIT PSNITISNTT NTTNTTGFY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	94.30103
Match:	1yoeA
Description:	Crystal structure of a the E. coli pyrimidine nucleoside hydrolase YbeK with bound ribose
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits