| Protein: | SPBC887.09c |
| Organism: | Schizosaccharomyces pombe |
| Length: | 886 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC887.09c.
| Description | E-value | Query Range |
Subject Range |
|
|
485.0 | [0..3] | [747..96] |
|
|
482.0 | [0..7] | [747..82] |
|
|
431.0 | [0..37] | [747..101] |
|
Region A: Residues: [1-629] |
1 11 21 31 41 51
| | | | | |
1 MSAHEVSSTK NSEIERIIKE AEDAGPENAL TLDLSHLNLR ELPYEQLERI QGRIARLALG 60
61 HNFIKSIGPE ILKFTRLRYL NIRSNVLREF PESLCRLESL EILDISRNKI KQLPESFGAL 120
121 MNLKVLSISK NRLFELPTYI AHMPNLEILK IENNHIVFPP PHIANNDLQD SDMQLFIANI 180
181 KGYLSRNESV FRTRSESTVS AALSASANLS HSEENDSSVV DSYLFSAPSD TSHAVSPGML 240
241 TFVTPSPHSH SPAGHQQSTP KSTLSKTNEN SEGTLYDSNV AHGCTHPPSL NQLNKFHLDA 300
301 SPRQARPRRS VSLATGLNSP SVSKPPSSAT GPLYHSPQSS LTNSSVASAD VQERTHNTNG 360
361 ASPIQDQISE FTDQHQNPSN NDAASTQSIL KTAPTQLSAS AKTSAISLPE VAKKERNRSN 420
421 STNDDYSSTR LPSSVLHRLE ALKEARKLSE QLPNRIFAQD PHPSPRLKKE ETHENGSNLT 480
481 NDSVNSYFSN IGGSEVEMKH SAFEKTLESS RGILFSLSQV QQALRQQLLF CSNPVVLDSM 540
541 RHVLHTANVQ IKRLILCFED TQQSNDGTAN INSIVNASLS CISSFRKLIE VTKKFLNELT 600
601 SRADVRYVRL LLLILFDAAK ELQNALVPL
|
| Detection Method: |  |
| Confidence: | 40.09691 |
| Match: | 2a0zA |
| Description: | The molecular structure of toll-like receptor 3 ligand binding domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [630-744] |
1 11 21 31 41 51
| | | | | |
1 SPSQPHSGNN IFADQVRQSP TSMIRTASGL TNRIVSVEKP ASVMNPEIDK QIQDQVALAT 60
61 NSAMSVLTLL IDAVPKNNQP DLVNENIAPN LISKLRELGS LSAAACDVTR KLKHR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.694 | a.47.2 | t-snare proteins |
| View | Download | 0.694 | a.47.2 | t-snare proteins |
| View | Download | 0.550 | a.29.13 | Description not found. |
| View | Download | 0.527 | d.110.4 | SNARE-like |
| View | Download | 0.527 | d.110.4 | SNARE-like |
| View | Download | 0.441 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.423 | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.405 | d.118.1 | N-acetylmuramoyl-L-alanine amidase-like |
| View | Download | 0.380 | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.328 | a.278.1 | Description not found. |
| View | Download | 0.310 | a.7.1 | Spectrin repeat |
| View | Download | 0.290 | d.110.4 | SNARE-like |
| View | Download | 0.286 | d.110.4 | SNARE-like |
|
Region A: Residues: [745-886] |
1 11 21 31 41 51
| | | | | |
1 LLTFQTNPEE LEWQLFLDDT QAFVKSIIAV ANLAKALSSE YTFQKSVLAG LSAATRSTKD 60
61 LTILLSSSAR HYTESSLATP VPLMSPIARV PATPLSAALG SAAQSITSPL IMSPAAIPAS 120
121 AYSTNKIDYF TDADGNVEGL QR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.305 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.305 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.261 | a.280.1 | Description not found. |
| View | Download | 0.241 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.237 | c.47.1 | Thioredoxin-like |
| View | Download | 0.218 | a.4.5 | "Winged helix" DNA-binding domain |
