YRC Public Data Repository - Protein Structure Prediction

Protein:	dam1
Organism:	Schizosaccharomyces pombe
Length:	155 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dam1.

Description	E-value	Query Range	Subject Range
gi\|39973959, gi\|... - gi\|39973959\|ref\|XP_368370.1\| hypothetical protein MG00874.4 [Magnaporthe grisea 70-15], gb\|EAA49216....	190.0	[0..16]	[154..40]
gi\|28920628, gi\|... - gi\|32413369\|ref\|XP_327164.1\| predicted protein [Neurospora crassa], gi\|28920628\|gb\|EAA29989.1\| predi... gi\|85092097 - gi\|85092097\|ref\|XP_959225.1\| hypothetical protein NCU06878 [Neurospora crassa OR74A]	185.0	[0..16]	[150..36]
gi\|46127147, gi\|... - gi\|46127147\|ref\|XP_388127.1\| hypothetical protein FG07951.1 [Gibberella zeae PH-1], gi\|42553725\|gb\|E...	178.0	[0..16]	[149..35]
DAM1_ASHGO - DASH complex subunit DAM1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-10... DAM1_ASHGO - DASH complex subunit DAM1 OS=Ashbya gossypii GN=DAM1 PE=3 SV=1	159.0	[0..32]	[149..61]
gi\|119194657, gi... - gi\|90306718\|gb\|EAS36349.1\| hypothetical protein CIMG_01703 [Coccidioides immitis RS], gi\|119194657\|r...	142.0	[0..20]	[153..40]
gi\|88175871, gi\|... - gi\|88175871\|gb\|EAQ83339.1\| hypothetical protein CHGG_09743 [Chaetomium globosum CBS 148.51], gi\|1162...	133.0	[0..16]	[138..78]
gi\|49092772, gi\|... - gi\|67526505\|ref\|XP_661314.1\| hypothetical protein AN3710.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	132.0	[0..30]	[127..49]
gi\|169617720, gi... - gi\|169617720\|ref\|XP_001802274.1\| hypothetical protein SNOG_12041 [Phaeosphaeria nodorum SN15], gi\|11...	126.0	[0..16]	[153..85]
gi\|66848781, gi\|... - gi\|70992599\|ref\|XP_751148.1\| hypothetical protein Afu6g12700 [Aspergillus fumigatus Af293], gi\|66848...	125.0	[0..30]	[95..50]
gi\|169770207 - gi\|169770207\|ref\|XP_001819573.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83767432 - gi\|83767432\|dbj\|BAE57571.1\| unnamed protein product [Aspergillus oryzae]	125.0	[0..30]	[152..51]

Back

Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKYQKATQN PLENVDNVKI ESENAIPSNL QAFTKSLAVL DDNVSEFRKR MNHLSATKQI  60
   61 LDNFNESFSS FLYGLQINAF CVDYENAPLS ESFLLQAKKD QFKATLMTRT GHSISDPPYD 120
  121 GGVISHDPNF ATADETFATN DTSFIERPET YSASR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.173925
Match:	PF08653.1
Description:	No description for PF08653.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits