YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC330.03c
Organism:	Schizosaccharomyces pombe
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC330.03c.

Description	E-value	Query Range	Subject Range
gi\|110742690 - gi\|110742690\|dbj\|BAE99256.1\| nitrate reductase [Arabidopsis thaliana]	181.0	[0..13]	[145..485]
gi\|46254755 - gi\|46254755\|gb\|AAS86310.1\| nitrate reductase 2; NR2 [synthetic construct]	180.0	[0..13]	[145..496]
NIA2_PHAVU - Nitrate reductase [NADH] 2 OS=Phaseolus vulgaris GN=NIA2 PE=3 SV=1	179.0	[0..13]	[145..456]
gi\|484212 - gi\|484212\|gb\|AAA33712.1\| nitrate reductase apoenzyme	178.0	[0..13]	[145..484]
gi\|2731816 - gi\|2731816\|gb\|AAB93560.1\| nitrate reductase [Glycine max]	177.0	[0..13]	[144..446]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSIFKNLLG TSEEDGTTQE ANSKDTKGLK EERKRKKRKN KYKIPPGHTQ QDWDALVASG  60
   61 KNLSGVESPI SVTAEELAKH CSPDDCWMAI RGKVYNVTAY LPYHPVGPKK ILKHSGVDAT 120
  121 KPYLKHHDWV NEEELLKTSF VGYLV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.39794
Match:	2ibjA
Description:	No description for 2ibjA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits