YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC1B3.05
Organism:	Schizosaccharomyces pombe
Length:	630 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1B3.05.

Description	E-value	Query Range	Subject Range
gi\|53933228, gi\|... - gi\|53933228\|ref\|NP_001005582.1\| CCR4-NOT transcription complex, subunit 3 [Danio rerio], gi\|51980573...	534.0	[0..9]	[626..20]
gi\|85075997 - gi\|85075997\|ref\|XP_955865.1\| hypothetical protein NCU03855 [Neurospora crassa OR74A] gi\|32405122, gi\|... - gi\|32405122\|ref\|XP_323174.1\| hypothetical protein [Neurospora crassa], gi\|28916889\|gb\|EAA26629.1\| hy...	519.0	[0..9]	[625..19]
gi\|40788331 - gi\|40788331\|dbj\|BAA31666.2\| KIAA0691 protein [Homo sapiens]	517.0	[0..9]	[626..29]
gi\|114678945 - gi\|114678945\|ref\|XP_512885.2\| PREDICTED: similar to KIAA0691 protein [Pan troglodytes]	510.0	[0..9]	[626..20]
gi\|73946893 - gi\|73946893\|ref\|XP_862826.1\| PREDICTED: similar to CCR4-NOT transcription complex subunit 3 (CCR4-as...	509.0	[0..9]	[626..20]
gi\|34854462 - gi\|34854462\|ref\|XP_218187.2\| PREDICTED: similar to CCR4-NOT transcription complex, subunit 3 [Rattus...	508.0	[0..9]	[626..20]
CNOT3_MOUSE - CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1	507.0	[0..9]	[626..20]
gi\|76642580 - gi\|76642580\|ref\|XP_605695.2\| PREDICTED: similar to CCR4-NOT transcription complex subunit 3 (CCR4-as...	495.0	[0..9]	[626..20]

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Predicted Domain #1

Region A:
Residues: [1-392]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAFYLHLEK IAIFDEVYEK LSASNSVSQK EKLEGDLKTQ IKKLQRLRDQ IKTWASSNDI  60
   61 KDKKALLENR RLIEAKMEEF KAVEREMKIK AFSKEGLSIA SKLDPKEKEK QDTIQWISNA 120
  121 VEELERQAEL IEAEAESLKA TFKRGKKDLS KLSHLSELES RIERHKWHQD KLELIMRRLE 180
  181 NSQISPEAVN DIQEDIMYYV ECSQSEDFAE DENLYDELNL DEASASYDAE RSGRSSSSSH 240
  241 SPSPSASSSS SSENLLQDKA EAEEKVSADA SVQDIAEKES LDADKELATN DQEDDEEENQ 300
  301 AETQKDGAIS NNENMQSEVQ TTNPSASTSA VTNITKPTLI QNPSTPLSVS NSKVASPETP 360
  361 NATHTAPKVE MRYASAAAAA AAALAKESPS HH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.46
Match:	1deqA
Description:	Fibrinogen
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [393-488]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YIMQQVRPET PNSPRLNSTV IQSKWDSLGH TASPKMQTQP VRSVSQSSAT TETNVKPTKE  60
   61 ENADVPVSSP DYLKDLVNAL NTSKEQHKGA IDKEKL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.33
Match:	1h1kI
Description:	THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [489-630]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEALNISCVY VPDATDAAKP QYYIPKDPYP VPHYYPQQPL PLFDSSEMTE LVDPDTLFYM  60
   61 FYYRPGTYQQ YIAGQELKKQ SWRFHKKYTT WFQRHEEPKM ITDEFESGSY RYFDFEGDWV 120
  121 QRKKADFRFT YQYLEDDDDW TR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	63.657577
Match:	PF04153.9
Description:	No description for PF04153.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits