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View Structure Prediction Details

Protein: erg1
Organism: Schizosaccharomyces pombe
Length: 457 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for erg1.

Description E-value Query
Range
Subject
Range
gi|27475612 - gi|27475612|emb|CAD23249.1| squalene monooxygenase 1 [Medicago truncatula]
283.0 [0..5] [454..54]
gi|115451725, gi... - gi|115451725|ref|NP_001049463.1| Os03g0231800 [Oryza sativa (japonica cultivar-group)], gi|113547934...
281.0 [0..5] [454..64]
gi|46359651 - gi|46359651|dbj|BAD15330.1| squalene epoxidase [Panax ginseng]
280.0 [0..6] [454..72]
gi|92122627 - gi|92122627|gb|ABE73759.1| squalene epoxidase [Panax notoginseng]
280.0 [0..6] [454..73]
ERG14_ARATH - Squalene epoxidase 1 OS=Arabidopsis thaliana GN=SQE1 PE=1 SV=1
277.0 [0..7] [454..62]

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Predicted Domain #1
Region A:
Residues: [1-457]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATQDADIII IGAGITGCAL GAALGRQGRK VLVLERDMSE PDRIVGELLQ PGGIEALEKI  60
   61 GIADAVEGID GQWTSGYQIF YGDSNVSVPY PSKPNGGAYQ GIGFHYGRFV MNLRKALTST 120
  121 PNVTVTEATV NELLRDETGE VITGVVTSSK KSESPVEYKA PLTIVCDGCF SKFRKAFIDH 180
  181 PIQVTDHFLG LILTNPDYIA PGRGHVILSK VAPMVLYPIS STEARILINY PGKNLPPMET 240
  241 LKKYVLESCV PNMPEKLRPS LKAAVYNDRL RSMPNQFLPP TVNRTKGMIL VGDSNNMRHP 300
  301 LTGGGMTVCF HDAYLLSRFI SPSAVPDLLD YERILNQMNK FHWKRKGYSF VINVLSIALY 360
  361 KLFTPKNRYM KALESGCIDY FKRGGNCVEG PIRLLGGLDH SPSHLIGHFY AVCLYGIYQY 420
  421 VLSGPALLMP VRIIESLLIF LQASLVIIPY ILSEMSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.0
Match: 2qa2A
Description: No description for 2qa2A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle