YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC63.10c
Organism:	Schizosaccharomyces pombe
Length:	465 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC63.10c.

Description	E-value	Query Range	Subject Range
gi\|68471832, gi\|... - gi\|68471832\|ref\|XP_719959.1\| hypothetical protein CaO19.261 [Candida albicans SC5314], gi\|46441806\|g... orf19.261 - orf19.261 CGDID:CAL0004029 Assembly 19, Contig19-10046 (56267, 54507) CDS, reverse complemented, tra...	288.0	[0..31]	[465..120]
CG8311-PA - This gene is referred to in FlyBase by the symbol Dmel\CG8311 (CG8311, FBgn0034141). It is a protein...	267.0	[0..63]	[461..120]
EVN_ARATH - Dolichol kinase EVAN OS=Arabidopsis thaliana GN=EVN PE=2 SV=1	251.0	[0..38]	[461..123]
SEC59_YEAST - Dolichol kinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC59 PE=1 SV=1 SEC59 - Dolichol kinase, catalyzes the terminal step in dolichyl monophosphate (Dol-P) biosynthesis; require...	234.0	[0..35]	[464..120]
gi\|58382882, gi\|... - gi\|58382882\|ref\|XP_312241.2\| ENSANGP00000010785 [Anopheles gambiae str. PEST], gi\|55242082\|gb\|EAA077...	233.0	[0..65]	[461..77]
DOLK_BOVIN - Dolichol kinase OS=Bos taurus GN=DOLK PE=2 SV=1	227.0	[0..104]	[450..173]
gi\|66358400 - gi\|66358400\|ref\|XP_626378.1\| hypothetical protein [Cryptosporidium parvum Iowa II] gi\|46227895 - gi\|46227895\|gb\|EAK88815.1\| hypothetical protein cgd2_1560 [Cryptosporidium parvum Iowa II]	224.0	[0..19]	[461..48]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKCYDTSE KIDREQECVE VNYQHRNFES ILEIFSVLFI PFLCNSGKKF LQISNASFFL  60
   61 PACFYLLGSS SIIQLYEPLL WLSS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [85-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPFCILYVGF GENSVLYHEM YTMEMALYCF RWTGFTFIEG ILICTGLTGL CFATFSYEVS  60
   61 PVVSVLSGVL LISLPTLILL NLCILKLAAK LHLSALFTTC LIYFFSALLV FLVSRSWVAG 120
  121 QLGQAPEVWL FNQIFSHRNS LTRIKIIIWW IICLGCFIFI LLRSNRN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [252-465]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPLGKYFTTE DEVLNFRRKT YHALVVFLFL PVCCLDPHFL HLSFSGVLFI FLFVEGIRIL  60
   61 RLKPFGKMIH EFLWEYTDNR DHKGPLIISH IYLLIGCAIP IWLSNALKGP VASVELLVGV 120
  121 LCLGCGDSMA SIIGKRFGKH RISKTNKSIE GVFAFSISVF LVLHLTQAFH VCPSVTFWKT 180
  181 LFMSLCTAIL EGVSTENDNL ILPMYMWVLY QALD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	5.200659
Match:	PF01148.11
Description:	No description for PF01148.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits