YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SPBC19C2.15c
Organism: Schizosaccharomyces pombe
Length: 208 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC19C2.15c.

Description E-value Query
Range
Subject
Range
gi|109494481 - gi|109494481|ref|XP_001071670.1| PREDICTED: similar to protein tyrosine phosphatase-like (proline in...
229.0 [0..21] [200..176]
gi|76609110 - gi|76609110|ref|XP_870174.1| PREDICTED: similar to LOC613886 protein [Bos taurus]
226.0 [0..4] [200..106]
HACD1_MOUSE - Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Mus musculus GN=Hacd1 PE=2 SV=1
224.0 [0..5] [200..64]
gi|109088316 - gi|109088316|ref|XP_001091308.1| PREDICTED: similar to protein tyrosine phosphatase-like, member A [...
222.0 [0..5] [200..71]
gi|42551365, gi|... - gi|46120466|ref|XP_385056.1| hypothetical protein FG04880.1 [Gibberella zeae PH-1], gi|42551365|gb|E...
221.0 [0..9] [208..538]
PTPLA - protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A
220.0 [0..4] [200..70]

Back

Predicted Domain #1
Region A:
Residues: [1-208]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKILKIQYL KLYNVISCFL WMSVLLRTGL IWGITKDTAV VFHETNTLVR WVQTLAIAEV  60
   61 FHSIFGLVSS SPLTTIIQVA SRLYLVWGVC YPFSYVIEGS PIYLSMIIAW SITEIIRYAF 120
  121 YAFNLNGDIP AFLTWLRYNT FLILYPIGAG SEFLLVLKSR IAAQYVWSLN KLLWPILMSI 180
  181 YPPGLYIMYT HMLAQRRKIS KRAAARRT

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 81.721246
Match: PF04387.5
Description: No description for PF04387.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle