YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC19C2.15c
Organism:	Schizosaccharomyces pombe
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC19C2.15c.

Description	E-value	Query Range	Subject Range
gi\|109494481 - gi\|109494481\|ref\|XP_001071670.1\| PREDICTED: similar to protein tyrosine phosphatase-like (proline in...	229.0	[0..21]	[200..176]
gi\|76609110 - gi\|76609110\|ref\|XP_870174.1\| PREDICTED: similar to LOC613886 protein [Bos taurus]	226.0	[0..4]	[200..106]
HACD1_MOUSE - Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Mus musculus GN=Hacd1 PE=2 SV=1	224.0	[0..5]	[200..64]
gi\|109088316 - gi\|109088316\|ref\|XP_001091308.1\| PREDICTED: similar to protein tyrosine phosphatase-like, member A [...	222.0	[0..5]	[200..71]
gi\|42551365, gi\|... - gi\|46120466\|ref\|XP_385056.1\| hypothetical protein FG04880.1 [Gibberella zeae PH-1], gi\|42551365\|gb\|E...	221.0	[0..9]	[208..538]
PTPLA - protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A	220.0	[0..4]	[200..70]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKILKIQYL KLYNVISCFL WMSVLLRTGL IWGITKDTAV VFHETNTLVR WVQTLAIAEV  60
   61 FHSIFGLVSS SPLTTIIQVA SRLYLVWGVC YPFSYVIEGS PIYLSMIIAW SITEIIRYAF 120
  121 YAFNLNGDIP AFLTWLRYNT FLILYPIGAG SEFLLVLKSR IAAQYVWSLN KLLWPILMSI 180
  181 YPPGLYIMYT HMLAQRRKIS KRAAARRT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	81.721246
Match:	PF04387.5
Description:	No description for PF04387.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits