YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: SPAC631.02
Organism: Schizosaccharomyces pombe
Length: 727 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC631.02.

Description E-value Query
Range
Subject
Range
BDF1_YEAST - Bromodomain-containing factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BDF1 PE=...
BDF1 - Protein involved in transcription initiation at TATA-containing promoters; associates with the basal...
304.0 [0..88] [703..1]
gi|1588281 - gi|1588281|prf||2208296A RING3 protein
303.0 [0..213] [713..11]
gi|73959566 - gi|73959566|ref|XP_867028.1| PREDICTED: similar to testis-specific bromodomain protein isoform 2 [Ca...
300.0 [0..216] [692..13]
SPCC1450.02 - bromodomain protein
BDF1_SCHPO - SWR1 complex bromodomain subunit bdf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bdf1...
296.0 [0..146] [700..2]
gi|1749522, gi|1... - gi|1749522|dbj|BAA13819.1| unnamed protein product [Schizosaccharomyces pombe], pir||T42517 bromodom...
292.0 [0..363] [713..11]
gi|114608260 - gi|114608260|ref|XP_527628.2| PREDICTED: pleckstrin homology domain interacting protein [Pan troglod...
284.0 [0..162] [700..1063]

Back

Predicted Domain #1
Region A:
Residues: [1-163]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPVQVPNLD VSVTSSLITT APVTGNAATI STFTPGSPEP SMNGEEKESS YFPISENDDG  60
   61 TLDLFGDSEL EKEQKGDNQE TDYSSQYLHP TPPYTNFDDE SPSSPTHPSV SNITVDGDSK 120
  121 KHSLQLQEEE KSSESLDSHT HPPKRVRNED DSLTFSKTSP VSP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [164-366]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSLKDGASNT VTNDASNKIK SEASESASPS ALQALDSTAA GSSKEHSSPH DETVKKEEND  60
   61 KDQYPPMTKE QHKYIHAMLR QLRRGRDSIP FRAPVDPVKQ NIPDYPTIIK NPIDLGTMQK 120
  121 KFSSGVYSSA QHFIDDMNLM FSNCFLYNGT ESPVGVMGKN LQATFERQLK QLPSAYVTSY 180
  181 SRPGRRPRSM TAPKGGARTR RQA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.522879
Match: 1z4rA
Description: Human GCN5 Acetyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [367-566]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AMYSNSSSGI RETMYDLKPH RRKDAAEMKF CQSVLKELLK KQHEAYAYPF YKPVNPTACG  60
   61 CPDYFKVIKH PMDLGTMQNK LNHNEYASMK AFEADMVLMF KNCYKFNSAG TPVHLMGKKL 120
  121 ESIFQKLWAN KPDFDSETYM GMSSVNTDYY YGDNEVFDSG DEFLEDDGEE FEAVNRQIHK 180
  181 LQSTLQAMKS RARSSSVSRR 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.69897
Match: 2dvvA
Description: No description for 2dvvA was found.

Predicted Domain #4
Region A:
Residues: [567-727]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRSRSLSVDI YPPITYEMQN ELAEQCNYLS ADQLSHVAEI LRAALPHLRN TDEIEIDVSA  60
   61 MPPDVFYKVY YYVCKGDEIG AEALATASHT HQEKKKGRAL SETEQAEKIR QLRAQLDRFS 120
  121 GIAQNKNTVT GNIAAYNTKS LGSDDSSSED DGESSESSDS A

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle