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View Structure Prediction Details

Protein: SPAC6B12.05c
Organism: Schizosaccharomyces pombe
Length: 295 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC6B12.05c.

Description E-value Query
Range
Subject
Range
MDN1_GIAIN - Midasin OS=Giardia intestinalis GN=MDN1 PE=3 SV=1
181.0 [0..11] [263..4248]
GL50803_39312 - | organism=Giardia_Assemblage_A_isolate_WB | product=Midasin | location=GLCHR02:40567-55074(+) | len...
ctg02_53|39312|M... - null
gi|157432603, gi... - gi|71070869|ref|XP_768005.1| hypothetical protein GLP_74_7403_21910 [Giardia lamblia ATCC 50803], gi...
181.0 [0..11] [263..4248]
MDN1 - Huge dynein-related AAA-type ATPase (midasin), forms extended pre-60S particle with the Rix1 complex...
MDN1_YEAST - Midasin OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MDN1 PE=1 SV=1
151.0 [0..7] [286..4260]
gi|44985952 - gi|44985952|gb|AAS54563.1| AGR074Cp [Ashbya gossypii ATCC 10895]
gi|45201169, gi|... - gi|45201169|ref|NP_986739.1| AGR074Cp [Ashbya gossypii ATCC 10895], gi|44985952|gb|AAS54563.1| AGR07...
137.0 [0..15] [271..4253]
MDN1 - MDN1, midasin homolog (yeast)
131.0 [0..3] [285..4794]
gi|114608501 - gi|114608501|ref|XP_518639.2| PREDICTED: MDN1, midasin homolog [Pan troglodytes]
115.0 [0..3] [285..4794]
CG13185-PB - This gene is referred to in FlyBase by the symbol Dmel\CG13185 (CG13185, FBgn0033661). It is a prote...
112.0 [0..11] [291..4626]

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Predicted Domain #1
Region A:
Residues: [1-154]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARRRSTRRA LVETPSDLNA QDSDSLSVST KEELGDDALA AEEGQSVLDE QEIEEALEED  60
   61 DTNYEEDIID DEESAQVDEE ELEEEEEEEE DATPEPVVTS KKNSRSKPKN GGASKRKASR 120
  121 RTVVDEDSEN LEGDEEDGSF SDLKDLYSNP MPAQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [155-295]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTPVSMRMTK RQRAIQGILE EGEEDELLEL PPETSGRKKL TPEEMALRRI ENARRRKNQS  60
   61 ERRLEEEKME TINRLLKRQS NTGKPRRGRA PNNPTSDSIS RSKAVPKDRI NMYQPFQCVR 120
  121 FKSTKEGSSL GVPEPLIRFF S

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 55.721246
Match: PF04795.3
Description: No description for PF04795.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.359 0.574 chromatin remodeling complex b.1.1 Immunoglobulin
View Download 0.466 0.181 chromatin remodeling complex c.47.1 Thioredoxin-like
View Download 0.288 0.050 chromatin remodeling complex a.45.1 Glutathione S-transferase (GST), C-terminal domain
View Download 0.466 0.015 chromatin remodeling complex a.24.3 Cytochromes
View Download 0.285 0.003 chromatin remodeling complex a.60.9 lambda integrase-like, N-terminal domain


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