YRC Public Data Repository - Protein Structure Prediction

Protein:	rrn5
Organism:	Schizosaccharomyces pombe
Length:	556 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rrn5.

Description	E-value	Query Range	Subject Range
gi\|6473974 - gi\|6473974\|dbj\|BAA87203.1\| Hypothetical protein [Schizosaccharomyces pombe]	414.0	[0..340]	[537..1]
gi\|85075810 - gi\|85075810\|ref\|XP_955825.1\| hypothetical protein NCU04353 [Neurospora crassa OR74A] gi\|32406186, gi\|... - gi\|32406186\|ref\|XP_323706.1\| predicted protein [Neurospora crassa], gi\|28916845\|gb\|EAA26589.1\| hypot...	306.0	[0..34]	[299..108]
gi\|67541072, gi\|... - gi\|67541072\|ref\|XP_664310.1\| hypothetical protein AN6706.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	296.0	[0..41]	[304..40]
gi\|46136551, gi\|... - gi\|46136551\|ref\|XP_389967.1\| hypothetical protein FG09791.1 [Gibberella zeae PH-1], gi\|42554810\|gb\|E...	290.0	[0..34]	[298..86]
gi\|38106720, gi\|... - gi\|39975907\|ref\|XP_369344.1\| hypothetical protein MGG_06120 [Magnaporthe grisea 70-15], gb\|EAA52992....	251.0	[0..34]	[247..155]
RRN5_YEAST - RNA polymerase I-specific transcription initiation factor RRN5 OS=Saccharomyces cerevisiae (strain A... RRN5 - Protein involved in transcription of rDNA by RNA polymerase I; transcription factor, member of UAF (...	190.0	[0..71]	[279..59]
gi\|70986942, gi\|... - gi\|70986942\|ref\|XP_748957.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668465... gi\|159123273 - gi\|159123273\|gb\|EDP48393.1\| conserved hypothetical protein [Aspergillus fumigatus A1163]	183.0	[0..63]	[323..103]
gi\|169766028 - gi\|169766028\|ref\|XP_001817485.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765340 - gi\|83765340\|dbj\|BAE55483.1\| unnamed protein product [Aspergillus oryzae]	178.0	[0..40]	[363..74]
gi\|44985701 - gi\|44985701\|gb\|AAS54325.1\| AGL166Wp [Ashbya gossypii ATCC 10895] gi\|44985701, gi\|... - gi\|45200931\|ref\|NP_986501.1\| AGL166Wp [Ashbya gossypii ATCC 10895], gi\|44985701\|gb\|AAS54325.1\| AGL16...	168.0	[0..25]	[238..54]

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Predicted Domain #1

Region A:
Residues: [1-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSINGLNE SEGSTPLSTA SIIGSSEQLY MTHDERYLDV LQQYEVETEN KRDFDLEEEQ  60
   61 WGVLSGSCVD GTYWSAEEKE LFFQAVARNG KRDLDLIAYS IPSKSAVQIE RYINALENEL 120
  121 RWLRNHVDAS VRSQCLLKYE DIPIAMEMSQ NWIDWEEKIA ERLLEGSNIS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [171-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVETSHYNAQ SVKNKTSNED LFDTNEMRKI SERFYHFDRQ APFPSNPLSA GATEFLLQII  60
   61 KSKLKELIGT SIFLAESRFR KLEANNAFHR KPIIKNRDVV LSGKFLRFHR FN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [283-353]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPGFWKYLPT RQKMNVYKRN KRLKFQNYIH IMESDERQSK LKLGRVRARK TKNNENTMFF  60
   61 DSKEHSTDES D

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [354-556]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNLGEHDVKR KVDSVPADET SINGFKKSVN QAEYPDNAQM FMDESVAEES LVEIDDSVEA  60
   61 YDMIQSKNYE SFVWKYVLHL TDEMSTEDAL FETIPLSNLL AQKRMKDKLK GSDVFTTLKI 120
  121 TSKSLHNIDE HSDSDDEVQP ICYYYKDPVV SHAPGAAEVV SELESGYVGL ISYDLSNLPN 180
  181 STEDPERKLA KPVSSWELSL PLK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits