YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC15A10.09c
Organism:	Schizosaccharomyces pombe
Length:	288 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC15A10.09c.

Description	E-value	Query Range	Subject Range
gi\|49095778, gi\|... - gi\|67538086\|ref\|XP_662817.1\| hypothetical protein AN5213.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	208.0	[0..14]	[287..10]
gi\|85116356 - gi\|85116356\|ref\|XP_965038.1\| hypothetical protein NCU07491 [Neurospora crassa OR74A] gi\|32414595, gi\|... - gi\|32414595\|ref\|XP_327777.1\| predicted protein [Neurospora crassa], gi\|28926839\|gb\|EAA35802.1\| predi...	195.0	[0..17]	[285..6]
gi\|46121827, gi\|... - gi\|46121827\|ref\|XP_385467.1\| hypothetical protein FG05291.1 [Gibberella zeae PH-1], gi\|42552684\|gb\|E...	189.0	[0..11]	[285..5]
gi\|164426759, gi... - gi\|164426759\|ref\|XP_961328.2\| hypothetical protein NCU03601 [Neurospora crassa OR74A], gi\|157071466\|... gi\|18376388 - gi\|18376388\|emb\|CAD21277.1\| conserved hypothetical protein [Neurospora crassa]	185.0	[0..12]	[284..62]
orf19.5643, orf1... - ECM7 CGDID:CAL0000638 Assembly 19, Contig19-10231 (14912, 16456) CDS, translated using codon table 1... gi\|68485387, gi\|... - gi\|68485482\|ref\|XP_713324.1\| hypothetical protein CaO19.5643 [Candida albicans SC5314], gi\|68485387\|...	180.0	[0..18]	[286..27]
gi\|83766319 - gi\|83766319\|dbj\|BAE56462.1\| unnamed protein product [Aspergillus oryzae] gi\|238484925, gi... - gi\|238484925\|ref\|XP_002373701.1\| integral membrane protein [Aspergillus flavus NRRL3357], gi\|2207017... gi\|169767986 - gi\|169767986\|ref\|XP_001818464.1\| hypothetical protein [Aspergillus oryzae RIB40]	178.0	[0..14]	[287..10]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMGFNPIKA LFTGIGTVCV GVGALLSILC IINQTQHNIA FQNIYFIQLN TTSIFSVANQ  60
   61 TAVVNNTSNL LNELTGTLVD TLETYIDQGA TDLIEQV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [98-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EQEMKDVSEL PDWYSIGLWN YCQGNSSDYT NPTYCSTPSP SYYFNPLTML ETSINNATGS  60
   61 QINITLPSEV DLGLKVLKGA CYAMRAMYIL GFIFFALTIV SIVISCLPFF GPLFLNVFSF 120
  121 FATIFTFIAA VIAVATYRIA ISELEKNIEI LNIPIVLGKK IYAYSFLSAA AGLAACILYF 180
  181 IGNLTSGYSP L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits