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View Structure Prediction Details

Protein: tim40
Organism: Schizosaccharomyces pombe
Length: 313 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tim40.

Description E-value Query
Range
Subject
Range
gi|16554449, gi|... - gi|16554449|ref|NP_003377.1| zonadhesin isoform 3 [Homo sapiens], gi|12667414|gb|AAK01433.1|AF332977...
169.0 [0..22] [312..629]

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Predicted Domain #1
Region A:
Residues: [1-178]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAKNLLFRF PKCIRINGYN NMRRSLLQRN GFQAGICRKF GTATKTDVWK GRFLPIVSGV  60
   61 AAASLTAGYL LGKNTSNASS SQDNDHPVVG EHVHTETQSY NEPYMQRHRI EDAIEKKMTS 120
  121 ETQPSTDEKG RKVSATENSA PKKTDKEKSS GETAGNILRE QIATGKDDDE YARKFEEV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [179-313]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEESSEESAF NPDTGEINWD CPCLGGMAHG PCGEEFKAAF SCFVYSKSEP KGMECLDKFQ  60
   61 AMQACFQKHP EIYQDMVGES EEEDAETNEK PSTTSDENNQ PQSPPSDNAS NPEEDVMNME 120
  121 KEIVNLTPMS VIKEI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle