YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC965.11c
Organism:	Schizosaccharomyces pombe
Length:	537 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC965.11c.

Description	E-value	Query Range	Subject Range
gi\|39943728, gi\|... - gi\|39943728\|ref\|XP_361401.1\| hypothetical protein MG03875.4 [Magnaporthe grisea 70-15], gb\|EAA50116....	332.0	[0..9]	[537..13]
orf19.3195 - HIP1 CGDID:CAL0002448 Assembly 19, Contig19-10170 (67622, 69421) CDS, translated using codon table 1... gi\|46436194, gi\|... - gi\|68482961\|ref\|XP_714611.1\| potential general amino acid permease [Candida albicans SC5314], gi\|464...	322.0	[0..17]	[536..66]
GNP1_YEAST - High-affinity glutamine permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GNP1 PE... GNP1 - High-affinity glutamine permease, also transports Leu, Ser, Thr, Cys, Met and Asn; expression is ful...	318.0	[0..3]	[536..107]
gi\|50292087, gi\|... - gi\|50292087\|ref\|XP_448476.1\| unnamed protein product [Candida glabrata], gi\|49527788\|emb\|CAG61437.1\|... gi\|49527788 - gi\|49527788\|emb\|CAG61437.1\| unnamed protein product [Candida glabrata]	317.0	[0..36]	[536..138]
gi\|238482071, gi... - gi\|238482071\|ref\|XP_002372274.1\| amino acid permease (Gap1), putative [Aspergillus flavus NRRL3357],... gi\|169765514 - gi\|169765514\|ref\|XP_001817228.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765083 - gi\|83765083\|dbj\|BAE55226.1\| unnamed protein product [Aspergillus oryzae]	315.0	[0..18]	[536..56]
gi\|42547995, gi\|... - gi\|46115914\|ref\|XP_383975.1\| hypothetical protein FG03799.1 [Gibberella zeae PH-1], gi\|42547995\|gb\|E...	314.0	[0..12]	[537..87]
gi\|85095443 - gi\|85095443\|ref\|XP_960090.1\| general amino-acid permease GAP1 [Neurospora crassa OR74A] gi\|32410409, gi\|... - gi\|32410409\|ref\|XP_325685.1\| hypothetical protein [Neurospora crassa], gi\|28921549\|gb\|EAA30854.1\| ge...	312.0	[0..5]	[536..104]

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Predicted Domain #1

Region A:
Residues: [1-461]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAAPSEKVP AKKLSSSENL DIGVSEVVTV DAAENNSNGI KRGLKTRHVS MMALAGIIGP  60
   61 GVFIGMGSAL HIGGPVGLIV GFAIVSIVVF GVMLSIGEFN SLFDFNFNTH AARWVDPAFG 120
  121 AAIGWNYVIV WLTNIAAEYT SLTSILQYWG PHVPSYGFFL IFWGFFTCYQ MLGVSVFGES 180
  181 EYILAFIKLL FITGFYIFAI IYAAGGIPHH KPPNLFKEMP LAHGFGGIVS AFVYAGVFFS 240
  241 GVESVSMTAA ESKNPKKAIP LAVRQTFWRI LYVYFGISIS YGITVAWNDP NLSSGSKTLK 300
  301 SPMTIAIMNA GWNHAGDFVN AVILITCLSS INSGIYIGSR SLYNLAKDGM APKIFKRVDK 360
  361 RGVPWVAVHS VHLFGFLSIM NYSTGAVKAY GYIINLAGVS AFIVWTAIIF VHFRFRRGWV 420
  421 KQGYALSDLP FKSPLYPFPQ LIGFVIGIIL TLVQGWTVFK P

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.46
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [462-537]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FAAGDFVDAY ILLPLFFVIW LSYKFIKKTK WVSYEDMDFI NGRRVIEPTY SNEQSSDKET  60
   61 EDGKKTSFWN RVWKEV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits