YRC Public Data Repository - Protein Structure Prediction

Protein:	imp2
Organism:	Schizosaccharomyces pombe
Length:	670 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for imp2.

Description	E-value	Query Range	Subject Range
gi\|83767591 - gi\|83767591\|dbj\|BAE57730.1\| unnamed protein product [Aspergillus oryzae] gi\|169770525 - gi\|169770525\|ref\|XP_001819732.1\| hypothetical protein [Aspergillus oryzae RIB40]	219.0	[0..15]	[668..12]
gi\|55960165, gi\|... - gi\|55960967\|emb\|CAI12278.1\| vav 2 guanine nucleotide exchange factor [Homo sapiens], gi\|55960165\|emb...	184.0	[0..32]	[667..179]
VAV2_MOUSE - Guanine nucleotide exchange factor VAV2 OS=Mus musculus GN=Vav2 PE=1 SV=1	183.0	[0..14]	[667..163]
gi\|164663858, gi... - gi\|164663858\|ref\|NP_001100033.2\| vav 2 guanine nucleotide exchange factor [Rattus norvegicus], gi\|10...	181.0	[0..14]	[667..163]
gi\|197102008 - gi\|197102008\|ref\|NP_001124861.1\| vav 2 guanine nucleotide exchange factor [Pongo abelii] gi\|55726161 - gi\|55726161\|emb\|CAH89854.1\| hypothetical protein [Pongo abelii]	180.0	[0..32]	[667..179]
gi\|109109865 - gi\|109109865\|ref\|XP_001099413.1\| PREDICTED: vav 2 oncogene isoform 3 [Macaca mulatta]	178.0	[0..32]	[667..179]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQQLSFNAS SAKPDKSFSN YFWGANDEGY HALLSRFSDV KHINEELRSF YHERANIEED  60
   61 YAKRMAKLSR TTFSSLETGC LKESVQVMKA EVDNMAKSHL QISQLLQDDV ENAFTRYAAS 120
  121 LKDKKKMIVS GIEKVHKDKL SKHQALVKAQ DKYHYLCKKV N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.522879
Match:	2v0oA
Description:	No description for 2v0oA was found.

Predicted Domain #2

Region A:
Residues: [162-670]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YYVSQQNMLF GKELEKNNAK LNKTQNAITA SSSDYQSAVA AVRDSYARWT NEWRSTCDKL  60
   61 QDIEEERRHF LKSVMWTFTL LISRSCFNDD QACERIRKNL EQCSVSQDVL EFIDAKSTGT 120
  121 GIPQPPKFYD YYKGEVPDDS VELVQANFQR AQTKIENDNM PLNRPYVLSA TARNESSFEN 180
  181 TLPNTPSAIQ SLTTVSSNSS QNGRSSPKKS FLSKFKLTSR PSTPNVGNTA PDALSSPRND 240
  241 SPLTSAADEQ MKHLSLQEEP KQNPTPAAPG AFPNSNTLPP RYNELGSLPS PNSVSFTEDS 300
  301 RPNVNTPSRR QQIQEEFGSV LQMENRAVSP VYDSRKNGSR SSFTLRKSRS PKRPSSSLSQ 360
  361 NASRLPRSLT PGNLEPNYDF GVRVDPASGT APTDDEPYTD RDSSFVDDTI NTKATGNTSN 420
  421 RLSLPAYPTD GGDTSIDNPT STDGQRILGY VSALYDYDAA IPEEISFRKG DTIAVLKLYE 480
  481 DGWWEGFVVG EDDHNRGQFP SNFVREIEV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.30103
Match:	2de0X
Description:	No description for 2de0X was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits