YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC2G2.15c
Organism:	Schizosaccharomyces pombe
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC2G2.15c.

Description	E-value	Query Range	Subject Range
gi\|89080519, gi\|... - gi\|89095222\|ref\|ZP_01168145.1\| cell division protein FtsJ [Oceanospirillum sp. MED92], gi\|89080519\|g...	207.0	[0..1]	[217..1]
sp\|B7UJ72\|RLME_ECO27 - Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC)... RRMJ_ECOLI - Ribosomal RNA large subunit methyltransferase J (EC 2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase... RLME_SHIFL - Ribosomal RNA large subunit methyltransferase E OS=Shigella flexneri GN=rlmE PE=3 SV=1 gi\|24053650, gi\|... - gi\|24114468\|ref\|NP_708978.1\| 23S rRNA methyltransferase J [Shigella flexneri 2a str. 301], gi\|240536... RLME_ECOL6 - Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 7009... gi\|30042776, gi\|... - gi\|30064517\|ref\|NP_838688.1\| 23S rRNA methyltransferase J [Shigella flexneri 2a str. 2457T], gi\|3004... RLME_ECO57 - Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli O157:H7 GN=rlmE PE=3 SV=1 EG11507 - 23S rRNA U2552 2'-O-ribose methyltransferase, SAM-dependent / 23S rRNA U2552 2'-O-ribose methyltrans... gi\|12517791, gi\|... - gi\|15803719\|ref\|NP_289753.1\| 23S rRNA methyltransferase J [Escherichia coli O157:H7 EDL933], gi\|1251... RLME_ECOLU - Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExP... gi\|227887900, gi... - gi\|227887900\|ref\|ZP_04005705.1\| 23S rRNA methyltransferase J [Escherichia coli 83972], gi\|227835296\|... gi\|237706069, gi... - gi\|237706069\|ref\|ZP_04536550.1\| ribosomal RNA large subunit methyltransferase J [Escherichia sp. 3_2... RLME_ECOBW - Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli (strain K12 / MC4100 / BW2952) G... gi\|251786449, gi... - gi\|251786449\|ref\|YP_003000753.1\| hypothetical protein B21_02995 [Escherichia coli BL21], gi\|24237872... gi\|253771987, gi... - gi\|254289871\|ref\|YP_003055619.1\| 23S rRNA methyltransferase [Escherichia coli BL21(DE3)], gi\|2539791... gi\|226839968, gi... - gi\|254038344\|ref\|ZP_04872402.1\| ribosomal RNA large subunit methyltransferase J [Escherichia sp. 1_1... gi\|253975022, gi... - gi\|254163121\|ref\|YP_003046229.1\| 23S rRNA methyltransferase [Escherichia coli B str. REL606], gi\|253... gi\|254594528, gi... - gi\|254795128\|ref\|YP_003079965.1\| 23S rRNA methyltransferase [Escherichia coli O157:H7 str. TW14359],... gi\|168754160, gi... - gi\|189358551\|gb\|EDU76970.1\| ribosomal RNA large subunit methyltransferase J [Escherichia coli O157:H... gi\|189001103, gi... - gi\|189001103\|gb\|EDU70089.1\| ribosomal RNA large subunit methyltransferase J [Escherichia coli O157:H... gi\|189364840, gi... - gi\|189364840\|gb\|EDU83256.1\| ribosomal RNA large subunit methyltransferase J [Escherichia coli O157:H... RLME_ECOK1 - Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli O1:K1 / APEC GN=rlmE PE=3 SV=1 RLME_ECODH - Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli (strain K12 / DH10B) GN=rlmE PE=... gi\|189373884, gi... - gi\|189373884\|gb\|EDU92300.1\| ribosomal RNA large subunit methyltransferase J [Escherichia coli O157:H... RLME_CITK8 - Ribosomal RNA large subunit methyltransferase E OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 422... gi\|190901915, gi... - gi\|75228764\|ref\|ZP_00715373.1\| COG0293: 23S rRNA methylase [Escherichia coli B7A], gi\|191168046\|ref\|... gi\|217327701, gi... - gi\|217327701\|ref\|ZP_03443784.1\| ribosomal RNA large subunit methyltransferase J [Escherichia coli O1... gi\|190907511, gi... - gi\|75240798\|ref\|ZP_00724696.1\| COG0293: 23S rRNA methylase [Escherichia coli F11], gi\|191172201\|ref\|... RLME_ECO27 - Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC)... RLME_ECOHS - Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli O9:H4 (strain HS) GN=rlmE PE=3 S... RLME_ECO8A - Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli O8 (strain IAI1) GN=rlmE PE=3 SV... gi\|75208503, gi\|... - gi\|75208503\|ref\|ZP_00708823.1\| COG0293: 23S rRNA methylase [Escherichia coli B171], gi\|194430230\|ref... RLME_ESCF3 - Ribosomal RNA large subunit methyltransferase E OS=Escherichia fergusonii (strain ATCC 35469 / DSM 1... RLME_ECOL6, RRMJ... - Ribosomal RNA large subunit methyltransferase J OS=Escherichia coli O6 GN=rrmJ PE=3 SV=1, Ribosomal ... RLME_SHIBS - Ribosomal RNA large subunit methyltransferase E OS=Shigella boydii serotype 4 (strain Sb227) GN=rlmE... RLME_ECO81 - Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli O81 (strain ED1a) GN=rlmE PE=3 S... gi\|146027, gi\|89... - gi\|89109942\|ref\|AP_003722.1\| 23S rRNA methyltransferase [Escherichia coli str. K-12 substr. W3110], ... RLME_ECO45 - Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=r... gi\|188494253, gi... - gi\|75510976\|ref\|ZP_00733735.1\| COG0293: 23S rRNA methylase [Escherichia coli 53638], gi\|188494253\|re... RLME_ECO7I - Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=... RLME_SHISS - Ribosomal RNA large subunit methyltransferase E OS=Shigella sonnei (strain Ss046) GN=rlmE PE=3 SV=1 RLME_ECO55 - Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli (strain 55989 / EAEC) GN=rlmE PE... gi\|13363531, gi\|... - gi\|15833312\|ref\|NP_312085.1\| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. Sakai], gi\|... RLME_ECOLC - Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / C... RLME_SHIB3 - Ribosomal RNA large subunit methyltransferase E OS=Shigella boydii serotype 18 (strain CDC 3083-94 /... RLME_ECOL5 - Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) G... RLME_ECOSM - Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rlmE... RLME_SHIF8 - Ribosomal RNA large subunit methyltransferase E OS=Shigella flexneri serotype 5b (strain 8401) GN=rl... gi\|208727671, gi... - gi\|208807870\|ref\|ZP_03250207.1\| ribosomal RNA large subunit methyltransferase J [Escherichia coli O1... EG11507 - 23S rRNA U2552 2'-O-ribose methyltransferase, SAM-dependent / 23S rRNA U2552 2'-O-ribose methyltrans... gi\|195938398 - gi\|195938398\|ref\|ZP_03083780.1\| 23S rRNA methyltransferase J [Escherichia coli O157:H7 str. EC4024] gi\|208740393, gi... - gi\|208820270\|ref\|ZP_03260590.1\| ribosomal RNA large subunit methyltransferase J [Escherichia coli O1... RLME_ECO24 - Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli O139:H28 (strain E24377A / ETEC)... gi\|208812489, gi... - gi\|208812489\|ref\|ZP_03253818.1\| ribosomal RNA large subunit methyltransferase J [Escherichia coli O1... RLME_ECOSE - Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli (strain SE11) GN=rlmE PE=3 SV=1 RLME_ECOUT - Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli (strain UTI89 / UPEC) GN=rlmE PE... RLME_ECO5E - Ribosomal RNA large subunit methyltransferase E OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) G...	204.0	[0..2]	[218..5]
RLME_PSEAB - Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rlm... RLME_PSEAE - Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 ... RLME_PSEAE, RRMJ... - Ribosomal RNA large subunit methyltransferase J OS=Pseudomonas aeruginosa GN=rrmJ PE=3 SV=2, Ribosom... RLME_PSEA8 - Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas aeruginosa (strain LESB58) GN=rlmE PE...	204.0	[0..1]	[217..1]
gi\|107103849 - gi\|107103849\|ref\|ZP_01367767.1\| hypothetical protein PaerPA_01004920 [Pseudomonas aeruginosa PACS2]	204.0	[0..1]	[217..1]
gi\|194555331, gi... - gi\|84323593\|ref\|ZP_00971662.1\| COG0293: 23S rRNA methylase [Pseudomonas aeruginosa 2192], gi\|2542443... gi\|84317369, gi\|... - gi\|84317369\|ref\|ZP_00965817.1\| COG0293: 23S rRNA methylase [Pseudomonas aeruginosa C3719], gi\|254238...	204.0	[0..1]	[217..1]
RLME_PSEA7 - Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas aeruginosa (strain PA7) GN=rlmE PE=3 ...	203.0	[0..1]	[217..1]
RLME_PSEU2 - Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas syringae pv. syringae (strain B728a) ...	202.0	[0..1]	[217..1]
gi\|90580530, gi\|... - gi\|90580530\|ref\|ZP_01236335.1\| 23S rRNA methylase [Vibrio angustum S14], gi\|90438188\|gb\|EAS63374.1\| ... gi\|89072568, gi\|... - gi\|89072568\|ref\|ZP_01159140.1\| 23S rRNA methylase [Photobacterium sp. SKA34], gi\|89051672\|gb\|EAR5712...	202.0	[0..1]	[217..1]
gi\|90326515, gi\|... - gi\|90412478\|ref\|ZP_01220481.1\| 23S rRNA methylase [Photobacterium profundum 3TCK], gi\|90326515\|gb\|EA...	202.0	[0..1]	[217..1]
RLME_PSE14 - Ribosomal RNA large subunit methyltransferase E OS=Pseudomonas savastanoi pv. phaseolicola (strain 1...	201.0	[0..1]	[217..1]

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Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGSKTLFSW AAKRSKDFYR KKSKIDNFRS RAAYKLIELN SKYRFINKED VVIDVGFAPG  60
   61 SWSQVAKKLV GNKGKVIGID IQHIAPPEGV LPIYGDIRDP NTLTKLFEAL RLLHEPNTND 120
  121 SIDCRVVDAV ISDMLHKATG IRIRDHALSM ELCASALHVA LTFLKSNGSF ICKFYMGDED 180
  181 ADLQNLLKSH FRFVQVMKPK ASLKESREAY FVCLERKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.045757
Match:	1eizA
Description:	RNA methyltransferase FtsJ
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methyltransferase activity	4.15445027778357	bayes_pls_golite062009
rRNA methyltransferase activity	4.09362182773099	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.07153733729662	bayes_pls_golite062009
N-methyltransferase activity	3.67177992319602	bayes_pls_golite062009
protein methyltransferase activity	3.5512266163483	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	3.39429041855776	bayes_pls_golite062009
RNA methyltransferase activity	3.07428840534971	bayes_pls_golite062009
histone methyltransferase activity	2.49492581548369	bayes_pls_golite062009
transferase activity	2.22303238506686	bayes_pls_golite062009
protein-arginine N-methyltransferase activity	2.06652984530965	bayes_pls_golite062009
arginine N-methyltransferase activity	2.06652984530965	bayes_pls_golite062009
rRNA (adenine) methyltransferase activity	1.83964463328968	bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.75675289134467	bayes_pls_golite062009
DNA-methyltransferase activity	1.63765148226572	bayes_pls_golite062009
histone-arginine N-methyltransferase activity	1.63076727020333	bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity	1.26493190370687	bayes_pls_golite062009
catalytic activity	1.25333584501255	bayes_pls_golite062009
tRNA methyltransferase activity	1.12859857407629	bayes_pls_golite062009
rRNA (guanine) methyltransferase activity	1.10713374933008	bayes_pls_golite062009
histone methyltransferase activity (H4-R3 specific)	0.720411427168235	bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity	0.703178429468566	bayes_pls_golite062009
protein-arginine omega-N asymmetric methyltransferase activity	0.606920378432989	bayes_pls_golite062009
transcription regulator activity	0.316272167949639	bayes_pls_golite062009
tRNA (cytosine-5-)-methyltransferase activity	0.299393192819978	bayes_pls_golite062009
tRNA (cytosine)-methyltransferase activity	0.299393192819978	bayes_pls_golite062009
DNA binding	0.26945982114479	bayes_pls_golite062009
O-methyltransferase activity	0.250946859465502	bayes_pls_golite062009
rRNA (guanine-N1-)-methyltransferase activity	0.234572322347698	bayes_pls_golite062009
nucleic acid binding	0.0339414270453529	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: