YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC106.07c
Organism:	Schizosaccharomyces pombe
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC106.07c.

Description	E-value	Query Range	Subject Range
gi\|85092020 - gi\|85092020\|ref\|XP_959187.1\| hypothetical protein NCU04644 [Neurospora crassa OR74A] gi\|28920589, gi\|... - gi\|32406774\|ref\|XP_324000.1\| predicted protein [Neurospora crassa], gi\|28920589\|gb\|EAA29951.1\| predi...	163.0	[0..15]	[164..67]
gi\|42546472, gi\|... - gi\|46136909\|ref\|XP_390146.1\| hypothetical protein FG09970.1 [Gibberella zeae PH-1], gi\|42546472\|gb\|E...	156.0	[0..8]	[164..62]
gi\|67528206, gi\|... - gi\|67528206\|ref\|XP_661913.1\| hypothetical protein AN4309.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	152.0	[0..20]	[164..73]
gi\|119112402, gi... - gi\|119112402\|ref\|XP_311751.3\| ENSANGP00000014322 [Anopheles gambiae str. PEST], gi\|116129928\|gb\|EAA0...	148.0	[0..2]	[167..55]
gi\|45198993, gi\|... - gi\|45198993\|ref\|NP_986022.1\| AFR475Cp [Ashbya gossypii ATCC 10895], gi\|44985068\|gb\|AAS53846.1\| AFR47... gi\|44985068 - gi\|44985068\|gb\|AAS53846.1\| AFR475Cp [Ashbya gossypii ATCC 10895]	145.0	[0..15]	[165..18]
C20orf108 - chromosome 20 open reading frame 108	143.0	[0..17]	[165..52]
gi\|55653050 - gi\|55653050\|ref\|XP_525363.1\| PREDICTED: similar to C20orf108 [Pan troglodytes]	143.0	[0..17]	[165..52]
gi\|109091545 - gi\|109091545\|ref\|XP_001090987.1\| PREDICTED: hypothetical protein [Macaca mulatta]	141.0	[0..17]	[165..52]

Back

Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNLWRNLKS VRLPFRRAPT LPLYNVPVRR SISSSSSIPP SSSPPPRLTI TQRVKELTKK  60
   61 YGWWSLGVYI GISVLDFSAS FVLVRTLGAE RIGYLEHSIL NSIRRYFNWE IPESTASGEP 120
  121 EAYHSSIWTE LAFAYGIHKA LVVARVPLTA AIVPPLAKRF RGPRIRP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits