YRC Public Data Repository - Protein Structure Prediction

Protein:	erg28
Organism:	Schizosaccharomyces pombe
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for erg28.

Description	E-value	Query Range	Subject Range
orf19.2016, orf1... - orf19.2016 CGDID:CAL0004337 Assembly 19, Contig19-10139 (59694, 60110) CDS, translated using codon t... gi\|46441416, gi\|... - gi\|68472800\|ref\|XP_719465.1\| hypothetical protein CaO19.2016 [Candida albicans SC5314], gi\|68472547\|... gi\|238881918 - gi\|238881918\|gb\|EEQ45556.1\| conserved hypothetical protein [Candida albicans WO-1]	182.0	[0..2]	[132..6]
gi\|46122583, gi\|... - gi\|46122583\|ref\|XP_385845.1\| hypothetical protein FG05669.1 [Gibberella zeae PH-1], gi\|42551089\|gb\|E...	178.0	[0..1]	[132..1]
gi\|18101633 - gi\|18101633\|gb\|AAL14202.2\| transmembrane domain-containing protein [Hypocrea jecorina]	176.0	[0..1]	[132..1]
gi\|151944754 - gi\|151944754\|gb\|EDN63013.1\| ergosterol biosynthesis protein [Saccharomyces cerevisiae YJM789] gi\|190405606 - gi\|190405606\|gb\|EDV08873.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] ERG28_YEAST - Ergosterol biosynthetic protein 28 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG28... ERG28 - Endoplasmic reticulum membrane protein, may facilitate protein-protein interactions between the Erg2...	175.0	[0..5]	[135..15]
gi\|45187773, gi\|... - gi\|45187773\|ref\|NP_983996.1\| ADL100Wp [Ashbya gossypii ATCC 10895], gi\|44982534\|gb\|AAS51820.1\| ADL10... gi\|44982534 - gi\|44982534\|gb\|AAS51820.1\| ADL100Wp [Ashbya gossypii ATCC 10895]	174.0	[0..4]	[133..14]
gi\|73964320 - gi\|73964320\|ref\|XP_854777.1\| PREDICTED: similar to Probable ergosterol biosynthetic protein 28 [Cani...	172.0	[0..11]	[125..259]
gi\|39940286, gi\|... - gi\|39940286\|ref\|XP_359680.1\| hypothetical protein MGG_05097 [Magnaporthe grisea 70-15], gb\|EAA52405....	172.0	[0..1]	[133..4]
gi\|49643268 - gi\|49643268\|emb\|CAG99220.1\| KLLA0E04203p [Kluyveromyces lactis] gi\|50308265, gi\|... - gi\|50308265\|ref\|XP_454133.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643268\|emb\|CAG9922...	169.0	[0..5]	[134..15]
gi\|49527132, gi\|... - gi\|50290777\|ref\|XP_447821.1\| unnamed protein product [Candida glabrata], gi\|49527132\|emb\|CAG60770.1\|... gi\|49527132 - gi\|49527132\|emb\|CAG60770.1\| unnamed protein product [Candida glabrata]	169.0	[0..8]	[134..18]
gi\|46097254, gi\|... - gi\|71006540\|ref\|XP_757936.1\| hypothetical protein UM01789.1 [Ustilago maydis 521], ref\|XP_399404.1\| ...	168.0	[0..3]	[132..2]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQILAMLPD SLVAKWNVVV SVAALFNTVQ SFLTPKLTKR VYSNTNEVNG LQGRTFGIWT  60
   61 LLSAIVRFYC AYHITNPDVY FLCQCTYYLA CFHFLSEWLL FRTTNLGPGL LSPIVVSTVS 120
  121 IWFMAKEKAS ILGIAA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	83.455932
Match:	PF03694.4
Description:	No description for PF03694.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits