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View Structure Prediction Details

Protein: rmi1
Organism: Schizosaccharomyces pombe
Length: 235 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rmi1.

Description E-value Query
Range
Subject
Range
gi|31541984, gi|... - gi|31541984|ref|NP_083180.2| RMI1, RecQ mediated genome instability 1, homolog [Mus musculus], gi|26...
242.0 [0..11] [233..15]
gi|55962252 - gi|55962252|emb|CAI13575.1| RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) [Homo ...
233.0 [0..11] [231..15]
gi|109505422 - gi|109505422|ref|XP_001067170.1| PREDICTED: similar to T07C12.12 [Rattus norvegicus]
233.0 [0..11] [233..452]
gi|55631843, gi|... - gi|55631843|ref|XP_528338.1| PREDICTED: hypothetical protein LOC80010 isoform 3 [Pan troglodytes], g...
233.0 [0..11] [231..15]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQTTTLSTE LTELGVRVQN RWLQSLLDYL AKKHSTGANT TPQLVMQYLV ASDIRESTTS  60
   61 EGAAPYIVSE QHNVRIENTM LLQIVRVREI GISIVNQLEY LND

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 26.920819
Match: PF08585.3
Description: No description for PF08585.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [104-235]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LEELKKLKGQ KVIRLVHDES GDEEQNDDDG LTEAQDAVQK GSELKKMCRL ILEDSNGQRF  60
   61 WGLERKPIKG IQLSTKLGTK LLVKNVLVRR GVLMLDPNNT TILGGSIEEW DKDYFPKRLI 120
  121 EELKGELSKT KA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle