YRC Public Data Repository - Protein Structure Prediction

Protein:	mdm31
Organism:	Schizosaccharomyces pombe
Length:	601 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mdm31.

Description	E-value	Query Range	Subject Range
gi\|42545182, gi\|... - gi\|46108924\|ref\|XP_381520.1\| hypothetical protein FG01344.1 [Gibberella zeae PH-1], gi\|42545182\|gb\|E...	740.0	[0..97]	[587..203]
gi\|44980800 - gi\|44980800\|gb\|AAS50705.1\| ABL066Cp [Ashbya gossypii ATCC 10895] gi\|45185164, gi\|... - gi\|45185164\|ref\|NP_982881.1\| ABL066Cp [Ashbya gossypii ATCC 10895], gi\|44980800\|gb\|AAS50705.1\| ABL06...	739.0	[0..79]	[591..43]
gi\|85106061 - gi\|85106061\|ref\|XP_962088.1\| hypothetical protein NCU07955 [Neurospora crassa OR74A] gi\|32416366, gi\|... - gi\|32416366\|ref\|XP_328661.1\| hypothetical protein [Neurospora crassa], gi\|28923683\|gb\|EAA32852.1\| hy...	739.0	[0..62]	[587..72]
gi\|119185108, gi... - gi\|90302157\|gb\|EAS31788.1\| hypothetical protein CIMG_07267 [Coccidioides immitis RS], gi\|119185108\|r...	733.0	[0..98]	[591..185]
gi\|49096926, gi\|... - gi\|67539232\|ref\|XP_663390.1\| hypothetical protein AN5786.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	731.0	[0..53]	[591..144]
gi\|114189974, gi... - gi\|115400890\|ref\|XP_001216033.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	727.0	[0..90]	[591..196]
gi\|83767113 - gi\|83767113\|dbj\|BAE57252.1\| unnamed protein product [Aspergillus oryzae] gi\|169769569 - gi\|169769569\|ref\|XP_001819254.1\| hypothetical protein [Aspergillus oryzae RIB40]	726.0	[0..90]	[591..55]
gi\|159124090 - gi\|159124090\|gb\|EDP49208.1\| mitochondrion biogenesis protein (Mdm31), putative [Aspergillus fumigatu... gi\|70991371, gi\|... - gi\|70991371\|ref\|XP_750534.1\| mitochondrion biogenesis protein (Mdm31) [Aspergillus fumigatus Af293],...	715.0	[0..49]	[591..148]
gi\|39940210, gi\|... - gi\|39940210\|ref\|XP_359642.1\| hypothetical protein MG05135.4 [Magnaporthe grisea 70-15], gb\|EAA52443....	697.0	[0..97]	[587..232]
gi\|151944138 - gi\|151944138\|gb\|EDN62431.1\| mitochondrial distribution and morphology [Saccharomyces cerevisiae YJM7... MDM31_YEAST - Mitochondrial distribution and morphology protein 31 OS=Saccharomyces cerevisiae (strain ATCC 204508... MDM31 - Mitochondrial inner membrane protein with similarity to Mdm32p, required for normal mitochondrial mo... gi\|207344496 - gi\|207344496\|gb\|EDZ71620.1\| YHR194Wp-like protein [Saccharomyces cerevisiae AWRI1631]	694.0	[0..111]	[591..87]

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Predicted Domain #1

Region A:
Residues: [1-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLESRLAKNI ARIVQARKPY LISYHVRAST QNALLKQTVL QSSSFKSFPT LPRLAARNIS  60
   61 NSGILSRTTP VIIKQISMVR SYSSGDVENP EILNKNESNQ SSGVKRAMPF RVLKKMKSFL 120
  121 FKQNKPLTVD NVTAFFSWWL VSHIVWIVVG TTTFFSLLLY TLNTVSAQEL LGRWIGQLMT 180
  181 KNTGFQFVFE SAIVPNWRKG LITFNKISVI RRPDTLNGIG AQNPNNKSDY EKEYMALRKR 240
  241 YDSNEEPDTE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [251-484]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALSQGNYTQF ELSIDKADVS FSFARFLNGK GIVKELQLKG VRGVVDRRFI EWDPSSDPRD  60
   61 YRRKHNWGDF EIEKFKLEDL RVTLLQPKGF RKFPVSVFFC ELPRLRKQWL FYDLMNAKTL 120
  121 TGSFDNSMFT IHRLQLRPYS PYLKVGKQLD DMRHSRLRID NVAIDHLNRG VSGAFGWIND 180
  181 GSVDFLVNIS FPSEPSENSF QKAWISLMDK LKKKEKDEDV YKDVHFDVNV QLHN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [485-601]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKAVIPIFTN QVSYINNALI RPIIAYINST RTFIPILCHV SKPLSDFDGS WTFYDSGVLQ  60
   61 EISAQVYESF ARDVLNQEIR RKRIQKVGYW SLRRFLHLVL VSLQELAPTT SSISNFE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits