YRC Public Data Repository - Protein Structure Prediction

Protein:	atp10
Organism:	Schizosaccharomyces pombe
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atp10.

Description	E-value	Query Range	Subject Range
gi\|38104073, gi\|... - gi\|39944942\|ref\|XP_362008.1\| hypothetical protein MGG_04453 [Magnaporthe grisea 70-15], gb\|EAA50694....	316.0	[0..26]	[264..174]
gi\|85118589 - gi\|85118589\|ref\|XP_965478.1\| hypothetical protein NCU02705 [Neurospora crassa OR74A] gi\|38567214, gi\|... - gi\|38567214\|emb\|CAE76506.1\| related to F1F0 ATPase complex assembly protein [Neurospora crassa], gi\|...	315.0	[0..42]	[264..100]
gi\|40746667, gi\|... - gi\|67519696\|ref\|XP_658834.1\| hypothetical protein AN1230.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	307.0	[0..31]	[264..80]
orf19.13731, orf... - orf19.6374 CGDID:CAL0001381 Assembly 19, Contig19-10247 (12069, 13199) CDS, translated using codon t... gi\|46437876, gi\|... - gi\|68479532\|ref\|XP_716130.1\| hypothetical protein CaO19.13731 [Candida albicans SC5314], gi\|68479365...	298.0	[0..17]	[264..108]
ATP10_ASHGO - Mitochondrial ATPase complex subunit ATP10 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC... ATP10_ASHGO - Mitochondrial ATPase complex subunit ATP10 OS=Ashbya gossypii GN=ATP10 PE=3 SV=1	290.0	[0..28]	[264..18]
gi\|116207034, gi... - gi\|88183407\|gb\|EAQ90875.1\| hypothetical protein CHGG_02810 [Chaetomium globosum CBS 148.51], gi\|1162...	287.0	[0..28]	[264..77]
gi\|114197187, gi... - gi\|115491399\|ref\|XP_001210327.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	283.0	[0..38]	[264..94]
gi\|83774048 - gi\|83774048\|dbj\|BAE64173.1\| unnamed protein product [Aspergillus oryzae] gi\|169781686 - gi\|169781686\|ref\|XP_001825306.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|220693753, gi... - gi\|238498488\|ref\|XP_002380479.1\| F1F0 ATP synthase assembly protein Atp10, putative [Aspergillus fla...	275.0	[0..38]	[264..94]
ATP10 - Mitochondrial inner membrane protein required for assembly of the F0 sector of mitochondrial F1F0 AT... gi\|151940914 - gi\|151940914\|gb\|EDN59296.1\| ATP synthase [Saccharomyces cerevisiae YJM789] ATP10_YEAST - Mitochondrial ATPase complex subunit ATP10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ...	266.0	[0..18]	[261..9]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYNYLKNLV IPRLIVKHQF KLRSFSTKSL NDTKEKAPSA LIPVGLLVKP TMLSEVQKPT  60
   61 LWEKLTKPAS TSSPEQRQKE LLNEMKRSTI QDFNEVRRFN GKLF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [105-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YSPPRLFKEK SALWMYNFHG KSLRNQYKEL YKDWQGSPFF FALFSNAFGE NQCRNWIQHL  60
   61 APFDYLPVRY ANVQSNLIKY WLQKIFIGKV KRSIPEKCWN EYITAYDNKF SFPEIGWNNK 120
  121 LVGNVYLIDD SCKIRWLGTG DPTNVEIENL KTAIKFLVNK NVG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.06
Match:	2h30A
Description:	No description for 2h30A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits