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View Structure Prediction Details

Protein: sld3
Organism: Schizosaccharomyces pombe
Length: 668 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sld3.

Description E-value Query
Range
Subject
Range
sld3 - DNA replication pre-initiation complex subunit Sld3
SLD3_SCHPO - DNA replication regulator sld3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sld3 PE=1 S...
581.0 [0..1] [668..1]
gi|38104245, gi|... - gi|39945236|ref|XP_362155.1| hypothetical protein MG04600.4 [Magnaporthe grisea 70-15], gb|EAA50841....
368.0 [0..8] [610..760]
gi|42553938, gi|... - gi|46125441|ref|XP_387274.1| hypothetical protein FG07098.1 [Gibberella zeae PH-1], gi|42553938|gb|E...
267.0 [0..8] [666..54]
unc-89 - status:Partially_confirmed UniProt:O01761 protein_id:AAP68958.1
241.0 [0..117] [650..1383]
gi|40746658, gi|... - gi|67518126|ref|XP_658825.1| hypothetical protein AN1221.2 [Aspergillus nidulans FGSC A4], ref|XP_40...
241.0 [0..11] [631..42]
gi|32420129, gi|... - gi|32420129|ref|XP_330508.1| predicted protein [Neurospora crassa], gi|28925935|gb|EAA34929.1| predi...
gi|85111914 - gi|85111914|ref|XP_964165.1| hypothetical protein NCU03072 [Neurospora crassa OR74A]
226.0 [0..8] [659..77]

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Predicted Domain #1
Region A:
Residues: [1-112]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNDHASKKS FCIKAPSNWE KSYLEVWPLV TVPRQCICLR WCISKEYHEF TCSSLQFIVI  60
   61 RPAGTSVLLG RVKSSKANQL VGIEHVEGSR YALIFLSEKL DFKSLKVIAN HQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [113-181]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTKSSKSLSN VSNKPLGDQL FRSNSLMSPS LLKKELHRIQ SDASQANERE SQAPHSFVTH  60
   61 DLISSSKDG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [182-363]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSLTHEFAND SVTEMVQDYT PSCSRDVKSL LDHLYNSYFY QLLMTKTPVV FYVKQMVGKT  60
   61 RQLAVEVHNH VEEKALVDEL LKFLDNLKSV DDRKSRLLQC FESHLNYKAW HLEFENEAHQ 120
  121 YEIKGYRLWL QNILNRENCQ ITKLDFEREF SQLKLKDLLD SRDSGKRKSR KKNAKTLNPF 180
  181 ET

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [364-592]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQLKLEFTFD GLCIRRTIEQ NATERSEDLL LKFCKETIVP YYSSKFPRIT RNLLEKCNGL  60
   61 DLLPERSHKH RHSAPPRSKL ISSKSEAGRA LPGNTSGASI SNTSSPHSEA SISKDYEILK 120
  121 RRRSNSGVHS LTRSDSSFNG FERDTRRRSS DIARIKNREI NLPSSSLSKQ RNSMHDISTN 180
  181 FPRRNLSFTE KLTMASLQGQ SEESVQPKTT SSLSRSKTLS ILEGSVSKR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [593-668]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEPSMDSILV QATPRKSSSV ITELPDTPIK MNSLDKASAC TVENHIVTES PAHKSNKAQL  60
   61 FVCVPTTPVK KKSASP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle