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View Structure Prediction Details

Protein: dre4
Organism: Schizosaccharomyces pombe
Length: 411 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dre4.

Description E-value Query
Range
Subject
Range
gi|113414055 - gi|113414055|ref|XP_943607.2| PREDICTED: similar to Pre-mRNA-processing factor 40 homolog A (Formin-...
253.0 [0..1] [402..136]
gi|114581253 - gi|114581253|ref|XP_515837.2| PREDICTED: formin binding protein 3 [Pan troglodytes]
251.0 [0..1] [402..136]
gi|73984336 - gi|73984336|ref|XP_849104.1| PREDICTED: similar to Formin-binding protein 3 (Huntingtin yeast partne...
251.0 [0..1] [402..158]
gi|149047811, gi... - gi|157817077|ref|NP_001099950.1| PRP40 pre-mRNA processing factor 40 homolog A [Rattus norvegicus], ...
249.0 [0..1] [402..121]
PR40A_MOUSE - Pre-mRNA-processing factor 40 homolog A OS=Mus musculus GN=Prpf40a PE=1 SV=1
gi|162319102 - gi|162319102|gb|AAI56260.1| PRP40 pre-mRNA processing factor 40 homolog A (yeast) [synthetic constru...
247.0 [0..1] [402..121]
gi|38111857, gi|... - gi|39946364|ref|XP_362719.1| hypothetical protein MGG_08329 [Magnaporthe grisea 70-15], gb|EAA57360....
240.0 [0..3] [406..17]

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Predicted Domain #1
Region A:
Residues: [1-151]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQPLPPGWT EHKAPSGIPY YWNAELKKST YQRPSFIEKN HSSSVTASQA SLAFNTSEKL  60
   61 FVNENAEERK NSRDLRKQLP DRPKFKKRIP NNDSWVVVFT KKNRYFFHNL KSHESYWEPP 120
  121 LEISKDLKIL RLPIRKQISK DSSQSQNVDS G

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.045757
Match: 1tk7A
Description: NMR structure of WW domains (WW3-4) from Suppressor of Deltex
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [152-232]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTNHEEIHES RHLQTEIEEP SGLEESSEES VLYSEEFYEK SDEEEDEEKS HSAEELEFGE  60
   61 EDIMYQLQQL DDETVSYDIQ E

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [233-291]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QATNLSTDDA RRVFTELLKD KNIGAYQPWE LVYPKLLDDD RFYVLDSGER RKEVFEEYC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.522879
Match: 2dodA
Description: No description for 2dodA was found.

Predicted Domain #4
Region A:
Residues: [292-411]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSVVSTKKIT RRKNTLSDFW TLLHSLPSTL LWPQFKRKYR KSSTLQIPGY SERDFEKLFR  60
   61 EFQILRKQPM QDKLLNFKKL CKSKTVDPKN PDEFTESILN DTRYAVLTRE ELDSLACSSN 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.30103
Match: 2e71A
Description: No description for 2e71A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle