YRC Public Data Repository - Protein Structure Prediction

Protein:	vma16
Organism:	Schizosaccharomyces pombe
Length:	199 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vma16.

Description	E-value	Query Range	Subject Range
gi\|47212525 - gi\|47212525\|emb\|CAG06230.1\| unnamed protein product [Tetraodon nigroviridis]	180.0	[0..3]	[190..13]
gi\|50751470 - gi\|50751470\|ref\|XP_422414.1\| PREDICTED: similar to ATPase, H+ transporting, V0 subunit B; ATPase, H+...	178.0	[0..6]	[194..158]
gi\|109127279 - gi\|109127279\|ref\|XP_001085529.1\| PREDICTED: similar to Vacuolar ATP synthase 16 kDa proteolipid subu...	178.0	[0..57]	[194..288]
gi\|52789283 - gi\|52789283\|gb\|AAH83129.1\| Atp6v0c protein [Mus musculus]	174.0	[0..22]	[194..34]
gi\|134091324, gi... - gi\|50255735\|gb\|EAL18467.1\| hypothetical protein CNBJ1090 [Cryptococcus neoformans var. neoformans B-...	169.0	[0..12]	[199..12]
gi\|27694747 - gi\|27694747\|gb\|AAH43805.1\| MGC64475 protein [Xenopus laevis]	169.0	[0..5]	[194..28]
gi\|58381684, gi\|... - gi\|58381684\|ref\|XP_311406.2\| ENSANGP00000025336 [Anopheles gambiae str. PEST], gi\|55242897\|gb\|EAA070...	168.0	[0..39]	[194..43]
gi\|238878295 - gi\|238878295\|gb\|EEQ41933.1\| vacuolar ATP synthase subunit c'' [Candida albicans WO-1] gi\|46444114, gi\|... - gi\|68467464\|ref\|XP_722165.1\| hypothetical protein CaO19.4954 [Candida albicans SC5314], gi\|46444114\|... orf19.4954 - orf19.4954 CGDID:CAL0006331 Assembly 19, Contig19-10216 (103449, 102859) CDS, reverse complemented, ...	165.0	[0..5]	[199..2]
gi\|49110393, gi\|... - gi\|67901232\|ref\|XP_680872.1\| hypothetical protein AN7603.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	165.0	[0..5]	[198..4]

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Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLFSTSLWT TTVMSIIVGL YMLFHNSGES FDFGSFLLDT SPYTWGLLGI ASCVAFGIIG  60
   61 AAWGIFICGT SILGGAVKAP RIKTKNLISI IFCEVVAIYS LIIAIVFSAK INDINPAGFY 120
  121 TKSHYYTGFA LFWGGITVGL CNLICGVCVG ITGSSAALAD AQDASLFVKV LVVEIFGSVL 180
  181 GLFGLIVGLL IGGKASDFS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	2bl2A
Description:	The membrane rotor of the V-type ATPase from Enterococcus hirae
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits