YRC Public Data Repository - Protein Structure Prediction

Protein:	uve1
Organism:	Schizosaccharomyces pombe
Length:	599 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for uve1.

Description	E-value	Query Range	Subject Range
gi\|46130858, gi\|... - gi\|46130858\|ref\|XP_389160.1\| hypothetical protein FG08984.1 [Gibberella zeae PH-1], gi\|42554499\|gb\|E...	347.0	[0..103]	[569..2]
gi\|38107557, gi\|... - gi\|39960756\|ref\|XP_364616.1\| hypothetical protein MG09461.4 [Magnaporthe grisea 70-15], gb\|EAA53711....	324.0	[0..32]	[599..45]
gi\|67516645, gi\|... - gi\|67516645\|ref\|XP_658208.1\| hypothetical protein AN0604.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	321.0	[0..190]	[581..5]
gi\|49070556, gi\|... - gi\|71007129\|ref\|XP_758099.1\| hypothetical protein UM01952.1 [Ustilago maydis 521], ref\|XP_399567.1\| ...	308.0	[0..77]	[590..17]
gi\|114192440, gi... - gi\|115397315\|ref\|XP_001214249.1\| UV-damage endonuclease [Aspergillus terreus NIH2624], gi\|114192440\|...	308.0	[0..198]	[581..2]
gi\|90298803, gi\|... - gi\|90298803\|gb\|EAS28434.1\| hypothetical protein CIMG_09638 [Coccidioides immitis RS], gi\|119175663\|r...	307.0	[0..243]	[598..944]
gi\|169773195 - gi\|169773195\|ref\|XP_001821066.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83768927 - gi\|83768927\|dbj\|BAE59064.1\| unnamed protein product [Aspergillus oryzae]	302.0	[0..227]	[581..40]
UVE1_NEUCR - UV-damage endonuclease OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 ... UVE1_NEUCR - UV-damage endonuclease OS=Neurospora crassa GN=uve-1 PE=2 SV=2	301.0	[0..97]	[570..32]
gi\|70992259, gi\|... - gi\|70992259\|ref\|XP_750978.1\| UV-endonuclease UVE-1 [Aspergillus fumigatus Af293], gi\|66848611\|gb\|EAL...	297.0	[0..223]	[581..32]
gi\|116200484, gi... - gi\|88175501\|gb\|EAQ82969.1\| hypothetical protein CHGG_10787 [Chaetomium globosum CBS 148.51], gi\|1162...	290.0	[0..123]	[596..62]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRLLKRNIQ ISKRIVFTIL KQKAFKGNHP CVPSVCTITY SRFHCLPDTL KSLLPMSSKT  60
   61 TLSMLPQVNI GANSFSAETP VDLKKENETE LANISGPHKK STSTSTRKR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [110-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ARSSKKKATD SVSDKIDESV ASYDSSTHLR RSSRSKKPVN YNSSSESESE EQISKATKKV  60
   61 KQKEEEEYVE EVDEKSLKNE SSSDEFEPVV PEQLETPISK RRRSRSSAKN LEKESTMNLD 120
  121 DHAPREMFDC LDKPIPWR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.17
Match:	2j63A
Description:	No description for 2j63A was found.

Predicted Domain #3

Region A:
Residues: [248-599]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRLGYACLNT ILRSMKERVF CSRTCRITTI QRDGLESVKQ LGTQNVLDLI KLVEWNHNFG  60
   61 IHFMRVSSDL FPFASHAKYG YTLEFAQSHL EEVGKLANKY NHRLTMHPGQ YTQIASPREV 120
  121 VVDSAIRDLA YHDEILSRMK LNEQLNKDAV LIIHLGGTFE GKKETLDRFR KNYQRLSDSV 180
  181 KARLVLENDD VSWSVQDLLP LCQELNIPLV LDWHHHNIVP GTLREGSLDL MPLIPTIRET 240
  241 WTRKGITQKQ HYSESADPTA ISGMKRRAHS DRVFDFPPCD PTMDLMIEAK EKEQAVFELC 300
  301 RRYELQNPPC PLEIMGPEYD QTRDGYYPPG AEKRLTARKR RSRKEEVEED EK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.221849
Match:	2j6vA
Description:	No description for 2j6vA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits