YRC Public Data Repository - Protein Structure Prediction

Protein:	ubp6
Organism:	Schizosaccharomyces pombe
Length:	467 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ubp6.

Description	E-value	Query Range	Subject Range
gi\|116193817, gi... - gi\|88182539\|gb\|EAQ90007.1\| hypothetical protein CHGG_06626 [Chaetomium globosum CBS 148.51], gi\|1161...	243.0	[0..2]	[466..4]
gi\|115386716, gi... - gi\|115386716\|ref\|XP_001209899.1\| hypothetical protein ATEG_07213 [Aspergillus terreus NIH2624], gi\|1...	241.0	[0..2]	[466..4]
gi\|28927360, gi\|... - gi\|32417262\|ref\|XP_329109.1\| hypothetical protein [Neurospora crassa], gi\|28927360\|gb\|EAA36314.1\| hy... gi\|85118957 - gi\|85118957\|ref\|XP_965550.1\| hypothetical protein NCU01919 [Neurospora crassa OR74A]	241.0	[0..2]	[466..4]
gi\|83772621 - gi\|83772621\|dbj\|BAE62749.1\| unnamed protein product [Aspergillus oryzae] gi\|169778835 - gi\|169778835\|ref\|XP_001823882.1\| hypothetical protein [Aspergillus oryzae RIB40]	238.0	[0..2]	[466..4]
usp-14 - Queuine trna-ribosyltransferase status:Confirmed UniProt:Q17361 protein_id:CAB05785.1	237.0	[0..1]	[466..1]
gi\|86196703, gi\|... - gi\|86196703\|gb\|EAQ71341.1\| hypothetical protein MGCH7_ch7g748 [Magnaporthe grisea 70-15], gi\|3997100...	236.0	[0..2]	[466..4]
gi\|73961836 - gi\|73961836\|ref\|XP_856160.1\| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 14 (Ubiquit...	235.0	[0..1]	[466..54]
UBP14_RABIT - Ubiquitin carboxyl-terminal hydrolase 14 OS=Oryctolagus cuniculus GN=USP14 PE=1 SV=3	234.0	[0..1]	[466..3]
gi\|148234941, gi... - gi\|51950231\|gb\|AAH82400.1\| MGC81945 protein [Xenopus laevis], gi\|148234941\|ref\|NP_001087872.1\| MGC81...	233.0	[0..1]	[467..3]

Back

Predicted Domain #1

Region A:
Residues: [1-397]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPIAIRWQG KKYDLEIEPN ETGSTLKHQL YSLTQVPPER QKVIVKGGQL KDDVLLGSVG  60
   61 IKPNATLLMM GTAGELPTAM PIPAVESVEQ EESEDDGYPS GLINLGNTCY MNSTVQMLRA 120
  121 IPELSDAVSQ FNSSGGLVAE YRTLLNSMQS NAPVTPMRFL QSLRMEYPQF AEMSRETGGY 180
  181 AQQDAEECWS FLLSVLQRSL SSEWVQKNMA GKLLSTMKCD ENEVQEQPSI SHDTFLSLPC 240
  241 HISMHTSYMT QGILEGLTQK ISKHSDVLNR DAMYSKISRI SRLPNYLTVN FVRFYWKASI 300
  301 GKKAKILRKV KFPFELDAVE FCTPELSQKL IPVRDKLREI EKNDEEHERA AKRIKIQPSE 360
  361 DEKEAEAECR LTQVATCQSL VDPELADDEG ANPTGLY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.0
Match:	2f1zA
Description:	Crystal structure of HAUSP
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [398-467]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLVGVLSHAG ASASSGHYQA WIRNSNNRAE WFRFNDAKVS IVPAEKIETL DGGGEADSAY  60
   61 ILLYKAKDIA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.09691
Match:	2aynA
Description:	Structure of USP14, a proteasome-associated deubiquitinating enzyme
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits