YRC Public Data Repository - Protein Structure Prediction

Protein:	ubp2
Organism:	Schizosaccharomyces pombe
Length:	1141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ubp2.

Description	E-value	Query Range	Subject Range
UBP2_YEAST - Ubiquitin carboxyl-terminal hydrolase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=... UBP2 - Ubiquitin-specific protease that removes ubiquitin from ubiquitinated proteins; interacts with Rsp5p...	522.0	[0..245]	[1136..352]
UBP2_KLULA - Ubiquitin carboxyl-terminal hydrolase 2 OS=Kluyveromyces lactis GN=UBP2 PE=3 SV=2 UBP2_KLULA - Ubiquitin carboxyl-terminal hydrolase 2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 7...	520.0	[0..243]	[1136..325]
gi\|2736164, gi\|7... - pir\|\|T30529 ubiquitin carboxyl-terminal hydrolase 2 - yeast (Kluyveromyces marxianus var. lactis), ...	513.0	[0..243]	[1136..325]
orf19.8088 - orf19.457 CGDID:CAL0005737 Assembly 19, Contig19-20052 (111969, 108055) CDS, reverse complemented, t... gi\|46437588, gi\|... - gi\|68480268\|ref\|XP_715942.1\| hypothetical protein CaO19.8088 [Candida albicans SC5314], gi\|46437588\|...	463.0	[0..227]	[1136..325]
gi\|46098640, gi\|... - gi\|71017655\|ref\|XP_759058.1\| hypothetical protein UM02911.1 [Ustilago maydis 521], ref\|XP_400526.1\| ...	454.0	[0..152]	[960..292]
gi\|44981242 - gi\|44981242\|gb\|AAS51064.1\| ACL164Cp [Ashbya gossypii ATCC 10895] gi\|44981242, gi\|... - gi\|45185524\|ref\|NP_983240.1\| ACL164Cp [Ashbya gossypii ATCC 10895], gi\|44981242\|gb\|AAS51064.1\| ACL16...	406.0	[0..245]	[711..301]
gi\|49527977 - gi\|49527977\|emb\|CAG61628.1\| unnamed protein product [Candida glabrata] gi\|50292465, gi\|... - gi\|50292465\|ref\|XP_448665.1\| unnamed protein product [Candida glabrata], gi\|49527977\|emb\|CAG61628.1\|...	396.0	[0..227]	[1135..306]
gi\|50426807, gi\|... - gi\|50426807\|ref\|XP_462001.1\| hypothetical protein DEHA0G11418g [Debaryomyces hansenii CBS767], gi\|49...	328.0	[0..227]	[1135..326]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVKNLRIG KSPNRLIQDL DVFDSPSAGW NDPWSPHSSR YHWQLHSNLG ESAVFDENDF  60
   61 WCVCQKTRKH LHVKVRRDRG KPLIEEPEEN YGIKDRIPVY YEEEELPEPH VTSPTKSEFA 120
  121 TTSTCMKWSS KTTKSEIEVE WRDSY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [146-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDANCIKEII DSRRPSFASL LTKKSSSHQG SSHSSQPSLF TTFTSLELFL RNVLVHNDQR  60
   61 AISAAPEGTF ERHVGKGRQI QSLMKSLLFE YHHENVNYVP T

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.38
Match:	2d5uA
Description:	No description for 2d5uA was found.

Predicted Domain #3

Region A:
Residues: [247-506]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IADAPLTDEQ KLNLYLARNE LIVLANHFRD TKEDPAIVAN PFPVRLARPA LINAFGVPNY  60
   61 DSVVPMYTTV FRDNSASLPD DPAFIALGIT NDYPDSFVRY FYEEQKKNDE ANVRVYADAL 120
  121 AHIYNLRKSS FLRDLIAADR KNGIVSSDVI QAAYSSLGLE AEVGPDYRYS QEKIFEAFHS 180
  181 ALLRKPEFAR AIRNDLETIG YARKSSEILN YVLSTEQAFY TVNEAYQWLG IKSNTEDAMV 240
  241 ASVALVKFED DSDKAIEAVK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [507-651]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WIAEERNSSI LYDFLASQGR PSNKKPKEVP MDEDLAYNTL GVQDRALSDD VLINVYGFAV  60
   61 EDHPEQSDTL RAALKCIGEV RNSRLITHYL EHGNLDIPPE VSSLDTPIGL ENTGNLCYLN 120
  121 SLIQYYFIIK PLRNAILDID ENKDL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.49
Match:	2gfoA
Description:	No description for 2gfoA was found.

Predicted Domain #5

Region A:
Residues: [652-1141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NMIENKEAVK KVGGRIVTRI EFLRALQFTY ELRKLFIELI TSKSSSVHPS SVLTYLALIP  60
   61 LTLDQVKSGT SSVMDLSSSR ELSNLNERSI TIDPRAEEQA QGLEQEQGQD EAKSPAEQSS 120
  121 SVNLIDFPMA NTNGESQTQP HYFEVSEEEI NSSMDLGRQQ DVLECIDHVL FQLEASLGRI 180
  181 SNSEDRLGSD NDLIRRLFSG KLKQTLNDAS QGVRSNYEIF SHLIVDLFEE KQTLYDALDG 240
  241 VFETVNIDMG SETAQRSLCI TELPIILQLQ IQRVQFDRTT GQPFKSNAFV EFGKELSMDR 300
  301 YVEDTDGKMA PLLQRYWDLK REIINLQKRQ QLLLTTNSNL MSSVDTLSIL SKWAAQQQDS 360
  361 RLPINPKLPD ILQEEINNVV AEVDMLKKQE ASLKEERTHL FDNYISHSYD LLAVFVHRGQ 420
  421 ASFGHYWTYI HDFENNVYRK YNDEYVTVVD ESEIFADTTG NNANPYMLTY IRKEYRHIIE 480
  481 CVHREHNLLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.69897
Match:	2f1zA
Description:	Crystal structure of HAUSP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits