YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC16A10.02
Organism:	Schizosaccharomyces pombe
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC16A10.02.

Description	E-value	Query Range	Subject Range
gi\|16610191 - gi\|16610191\|emb\|CAD10638.1\| PBF68 protein [Nicotiana tabacum]	131.0	[0..11]	[136..106]
gi\|73954359 - gi\|73954359\|ref\|XP_536425.2\| PREDICTED: similar to Activated RNA polymerase II transcriptional coact...	128.0	[0..4]	[94..220]
gi\|44980980 - gi\|44980980\|gb\|AAS50863.1\| ABR093Cp [Ashbya gossypii ATCC 10895] gi\|44980980, gi\|... - gi\|45185322\|ref\|NP_983039.1\| ABR093Cp [Ashbya gossypii ATCC 10895], gi\|44980980\|gb\|AAS50863.1\| ABR09...	125.0	[0..6]	[125..27]
gi\|145018284, gi... - gi\|39974147\|ref\|XP_368464.1\| predicted protein [Magnaporthe grisea 70-15], gb\|EAA49122.1\| hypothetic...	118.0	[0..5]	[136..28]
gi\|26451026, gi\|... - gi\|30678785\|ref\|NP_567205.2\| zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana], gi\|2902...	118.0	[0..3]	[102..75]
gi\|42544337, gi\|... - gi\|46137341\|ref\|XP_390362.1\| hypothetical protein FG10186.1 [Gibberella zeae PH-1], gi\|42544337\|gb\|E...	118.0	[0..10]	[133..22]
gi\|67539272, gi\|... - gi\|67539272\|ref\|XP_663410.1\| hypothetical protein AN5806.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	117.0	[0..13]	[136..38]
gi\|169784084 - gi\|169784084\|ref\|XP_001826504.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83775248 - gi\|83775248\|dbj\|BAE65371.1\| unnamed protein product [Aspergillus oryzae]	111.0	[0..14]	[133..40]
gi\|114600763 - gi\|114600763\|ref\|XP_001154452.1\| PREDICTED: similar to SUB1 homolog (S. cerevisiae) isoform 2 [Pan t...	111.0	[0..4]	[94..55]
gi\|109076878 - gi\|109076878\|ref\|XP_001089347.1\| PREDICTED: similar to Activated RNA polymerase II transcriptional c...	109.0	[0..4]	[94..68]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKRVIASG DKASSKKPKT EKQSDHELHW ALNETEKKRI TLSEFRGTRY VHIREYYEKD  60
   61 GDMLPGKKGI ALNINEWKKL KQLIHEVDDS LGLVDSGSDS EDEIKEKAEN NASLKNDEDD 120
  121 LNTKTENKTD DSSVEN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	1pcfA
Description:	Transcriptional coactivator PC4 C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits