YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1672.05c
Organism:	Schizosaccharomyces pombe
Length:	401 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1672.05c.

Description	E-value	Query Range	Subject Range
gi\|68057414, gi\|... - gi\|68249215\|ref\|YP_248327.1\| tryptophanyl-tRNA synthetase [Haemophilus influenzae 86-028NP], gi\|6805...	300.0	[0..33]	[366..5]
SYW_HAEIN - Tryptophanyl-tRNA synthetase OS=Haemophilus influenzae GN=trpS PE=3 SV=1 SYW_HAEIN - Tryptophan--tRNA ligase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=trp...	299.0	[0..33]	[366..3]
gi\|229809654, gi... - gi\|229847416\|ref\|ZP_04467516.1\| tryptophanyl-tRNA synthetase [Haemophilus influenzae 7P49H1], gi\|229... gi\|46133005 - gi\|46133005\|ref\|ZP_00156437.2\| COG0180: Tryptophanyl-tRNA synthetase [Haemophilus influenzae R2866] gi\|42628929 - gi\|42628929\|ref\|ZP_00154481.1\| COG0180: Tryptophanyl-tRNA synthetase [Haemophilus influenzae R2846]	299.0	[0..33]	[366..3]
SYYC_XENLA - Tyrosine--tRNA ligase, cytoplasmic OS=Xenopus laevis GN=yars PE=2 SV=1	293.0	[0..2]	[375..4]
gi\|85060282, gi\|... - gi\|85060282\|ref\|YP_455984.1\| tryptophanyl-tRNA synthase [Sodalis glossinidius str. 'morsitans'], gi\|...	293.0	[0..33]	[366..3]
gi\|77962693, gi\|... - gi\|77962693\|ref\|ZP_00826510.1\| COG0180: Tryptophanyl-tRNA synthetase [Yersinia mollaretii ATCC 43969...	291.0	[0..24]	[366..6]
gi\|77958284 - gi\|77958284\|ref\|ZP_00822320.1\| COG0180: Tryptophanyl-tRNA synthetase [Yersinia bercovieri ATCC 43970...	291.0	[0..32]	[366..14]
SYW_YERPE - Tryptophan--tRNA ligase OS=Yersinia pestis GN=trpS PE=1 SV=2	291.0	[0..33]	[366..11]
gi\|15978262, gi\|... - gi\|218927368\|ref\|YP_002345243.1\| tryptophanyl-tRNA synthetase [Yersinia pestis CO92], gi\|16120500\|re... gi\|165915897, gi... - gi\|89105794\|ref\|ZP_01178307.1\| COG0180: Tryptophanyl-tRNA synthetase [Yersinia pestis biovar Orienta... gi\|165919990, gi... - gi\|165928041\|ref\|ZP_02223873.1\| tryptophanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.... gi\|161511471 - gi\|161511471\|ref\|NP_991560.2\| tryptophanyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 910... gi\|229706430, gi... - gi\|229836362\|ref\|ZP_04456529.1\| tryptophan-tRNA ligase [Yersinia pestis Pestoides A], gi\|229706430\|g... gi\|166205661, gi... - gi\|166213363\|ref\|ZP_02239398.1\| tryptophanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. B4... gi\|229696379, gi... - gi\|229840013\|ref\|ZP_04460172.1\| tryptophan-tRNA ligase [Yersinia pestis biovar Orientalis str. PEXU2... gi\|165990587, gi... - gi\|166010497\|ref\|ZP_02231395.1\| tryptophanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. E1... gi\|229842094, gi... - gi\|229842094\|ref\|ZP_04462249.1\| tryptophan-tRNA ligase [Yersinia pestis biovar Orientalis str. India... Q664M5\|Q664M5_YERPS - Tryptophanyl-tRNA synthetase - Yersinia pseudotuberculosis gi\|108809303, gi... - gi\|108809303\|ref\|YP_653219.1\| tryptophanyl-tRNA synthetase [Yersinia pestis Antiqua], gi\|108781216\|g... gi\|108814068, gi... - gi\|229904605\|ref\|ZP_04519716.1\| tryptophan-tRNA ligase [Yersinia pestis Nepal516], gi\|229678723\|gb\|E... gi\|167418947, gi... - gi\|167418947\|ref\|ZP_02310700.1\| tryptophanyl-tRNA synthetase [Yersinia pestis biovar Orientalis str.... gi\|167052166, gi... - gi\|167399662\|ref\|ZP_02305186.1\| tryptophanyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. UG... gi\|167468237 - gi\|167468237\|ref\|ZP_02332941.1\| tryptophanyl-tRNA synthetase [Yersinia pestis FV-1] gi\|162352752, gi... - gi\|77634598\|ref\|ZP_00796695.1\| COG0180: Tryptophanyl-tRNA synthetase [Yersinia pestis Angola], gi\|16... gi\|167425697, gi... - gi\|167425697\|ref\|ZP_02317450.1\| tryptophanyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str... gi\|25292924 - gi\|25292924\|pir\|\|AB0020 tryptophan-tRNA ligase (EC 6.1.1.2) [imported] - Yersinia pestis (strain CO9... gi\|186897233, gi... - gi\|186897233\|ref\|YP_001874345.1\| tryptophanyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+], g... gi\|149290247, gi... - gi\|150260839\|ref\|ZP_01917567.1\| tryptophanyl-tRNA synthetase [Yersinia pestis CA88-4125], gi\|1492902... gi\|170022492, gi... - gi\|170022492\|ref\|YP_001718997.1\| tryptophanyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII], g... gi\|51591316, gi\|... - gi\|51598034\|ref\|YP_072225.1\| tryptophanyl-tRNA synthetase [Yersinia pseudotuberculosis IP 32953], gi... gi\|145597407, gi... - gi\|145597407\|ref\|YP_001161482.1\| tryptophanyl-tRNA synthetase [Yersinia pestis Pestoides F], gi\|1452... gi\|21960941, gi\|... - gi\|22127810\|ref\|NP_671233.1\| tryptophanyl-tRNA synthetase [Yersinia pestis KIM], gi\|21960941\|gb\|AAM8...	291.0	[0..33]	[366..15]
gi\|152958604, gi... - gi\|77631138\|ref\|ZP_00793724.1\| COG0180: Tryptophanyl-tRNA synthetase [Yersinia pseudotuberculosis IP...	290.0	[0..33]	[366..15]

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Predicted Domain #1

Region A:
Residues: [1-401]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLTPDEKYE LITRNLQEVL GAKMIREILN ERDISLYWGS APTGRPHCGY FVPMMKLADF  60
   61 LKAGVHVTVL LADVHAFLDN MKAPMELVQH RVRYYEIIVK SILKSLNIPI EKLRFVIGSS 120
  121 YQLKEDYTLD NFRLAASTTE HTARRAGAEV VKQVASPLLS SLIYPGMQAL DEQYLGVDVQ 180
  181 FGGVDQRKIF VMAEEVLPVL GYKKRGHLMN PMVPSLAGGK MSSSAAANAK IDILDDPKTV 240
  241 NKKIRSAFCE PGVVEENGCL AFLKYVSFPA MELRGETEFV IDRPEQFGGR MVFKTYEEVE 300
  301 KAYKDLTLSP QDLKLGLESS VNTLLAGVQE QLKQYPDLDS ILKAAYPDPK DLKKAMKQKK 360
  361 QDKKNAKKAG TTNASIAAES GAAPATESQT AESFKKLNLD D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.30103
Match:	2dlcX
Description:	No description for 2dlcX was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits