YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC970.06
Organism:	Schizosaccharomyces pombe
Length:	302 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC970.06.

Description	E-value	Query Range	Subject Range
gi\|145013229, gi... - gi\|39959108\|ref\|XP_364464.1\| hypothetical protein MGG_09309 [Magnaporthe grisea 70-15], gb\|EAA55502....	363.0	[0..1]	[302..1]
gi\|85113270 - gi\|85113270\|ref\|XP_964496.1\| hypothetical protein NCU03319 [Neurospora crassa OR74A] gi\|32420623, gi\|... - gi\|32420623\|ref\|XP_330755.1\| hypothetical protein [Neurospora crassa], gi\|28926280\|gb\|EAA35260.1\| hy...	356.0	[0..1]	[302..12]
gi\|169781458 - gi\|169781458\|ref\|XP_001825192.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|238498238, gi... - gi\|238498238\|ref\|XP_002380354.1\| COPII-coated vesicle protein SurF4/Erv29, putative [Aspergillus fla... gi\|83773934 - gi\|83773934\|dbj\|BAE64059.1\| unnamed protein product [Aspergillus oryzae]	355.0	[0..1]	[302..12]
gi\|115491671, gi... - gi\|115491671\|ref\|XP_001210463.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	354.0	[0..1]	[302..12]
gi\|66850178, gi\|... - gi\|70995576\|ref\|XP_752543.1\| COPII-coated vesicle protein SurF4/Erv29 [Aspergillus fumigatus Af293],... gi\|159131298 - gi\|159131298\|gb\|EDP56411.1\| COPII-coated vesicle protein SurF4/Erv29, putative [Aspergillus fumigatu...	354.0	[0..1]	[302..12]
gi\|41581252 - gi\|41581252\|emb\|CAE47901.1\| surfeit locus protein 4 homologue, putative [Aspergillus fumigatus]	348.0	[0..1]	[302..12]
gi\|42545731, gi\|... - gi\|46107310\|ref\|XP_380714.1\| hypothetical protein FG00538.1 [Gibberella zeae PH-1], gi\|42545731\|gb\|E...	348.0	[0..8]	[302..13]
gi\|111064282, gi... - gi\|169607389\|ref\|XP_001797114.1\| hypothetical protein SNOG_06751 [Phaeosphaeria nodorum SN15], gi\|11...	346.0	[0..8]	[302..13]
gi\|71019269, gi\|... - gi\|71019269\|ref\|XP_759865.1\| hypothetical protein UM03718.1 [Ustilago maydis 521], ref\|XP_401333.1\| ...	345.0	[0..2]	[301..32]
gi\|119184381, gi... - gi\|90301896\|gb\|EAS31527.1\| hypothetical protein CIMG_07006 [Coccidioides immitis RS], gi\|119184381\|r... gi\|240109864 - gi\|240109864\|gb\|EER28033.1\| SURF4 family protein [Coccidioides posadasii C735 delta SOWgp]	344.0	[0..1]	[302..12]

Back

Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSRSPFSTI PLSMNQDSYQ TRTTVGIRKK TFSERACQFM EQAETFMAPF TPYMPLLGRF  60
   61 LIVATYFEDA IRIVTQWPEQ VSYMRDYRRF RFGTAPLLLF VCVVLMLVGS TLVVFKKRQA 120
  121 YAIGSLLFVT LLQAFAYGLI TSGEMFFRNM SVIGGLCLVA SDTFIHRRIN RFAGLPAVSE 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [181-302]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HNKRTYFQLA GRVLLIFMFL GLLAKEGSGI SWTRILVHIL SVTACAMVVI GFKAKFFAAV  60
   61 LVLILSVANF IINSFWSVPR ESPYRDFYRY DFFQTLSIVG GLLYLVNTGP GKFSVDEKKK 120
  121 IY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits