YRC Public Data Repository - Protein Structure Prediction

Protein:	sts1
Organism:	Schizosaccharomyces pombe
Length:	453 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sts1.

Description	E-value	Query Range	Subject Range
gi\|49095720, gi\|... - gi\|67538028\|ref\|XP_662788.1\| hypothetical protein AN5184.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	587.0	[0..2]	[452..115]
gi\|114195907, gi... - gi\|115388635\|ref\|XP_001211823.1\| Delta(24(24(1)))-sterol reductase [Aspergillus terreus NIH2624], gi...	575.0	[0..2]	[450..104]
gi\|39968745, gi\|... - gi\|39968745\|ref\|XP_365763.1\| hypothetical protein MGG_02465 [Magnaporthe grisea 70-15], gb\|EAA54480....	562.0	[0..2]	[452..144]
gi\|70991224, gi\|... - gi\|70991224\|ref\|XP_750461.1\| c-24(28) sterol reductase [Aspergillus fumigatus Af293], gi\|66848093\|gb...	562.0	[0..2]	[453..124]
gi\|101081, gi\|5109 - gi\|5109\|emb\|CAA45113.1\| sts1+ [Schizosaccharomyces pombe], pir\|\|A43765 sts1+ protein - fission yeast...	560.0	[0..1]	[453..1]
gi\|16944336 - gi\|16944336\|emb\|CAC18223.2\| probable sterol C-24 reductase [Neurospora crassa]	557.0	[0..1]	[452..177]
gi\|46136975, gi\|... - gi\|46136975\|ref\|XP_390179.1\| hypothetical protein FG10003.1 [Gibberella zeae PH-1], gi\|42546505\|gb\|E...	555.0	[0..2]	[452..153]
gi\|32412692, gi\|... - gi\|32412692\|ref\|XP_326826.1\| probable sterol C-24 reductase [MIPS] [Neurospora crassa], gi\|28922964\|... gi\|85102913 - gi\|85102913\|ref\|XP_961419.1\| probable sterol C-24 reductase [MIPS] [Neurospora crassa OR74A]	554.0	[0..1]	[450..177]
LBR_MOUSE - Lamin-B receptor OS=Mus musculus GN=Lbr PE=1 SV=2	549.0	[0..4]	[453..211]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSTVKKSAP REFGGAKGAL AIMTGFPCLM YYLWACSKFN DSQFIKPESF TIAGFQNFFR  60
   61 TLGHYIYVGA YPTRYAFLVF WSFCIVQAVM YLTLPGVRTQ GLPLKHRNNE RLPYLCNAIW 120
  121 SFYTTIVILA VLHVTHVFPI TTFIDMFGPL MSVAIITAFV CTFVLYTGTL L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [172-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGDRLFDKPH RLSGNPIYDA FMGACLNPRL GKLLDFKMFF EVRIPWFILF FISVGAAVRQ  60
   61 YETYGTVSPQ VLFVCLGH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [250-366]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YLYANACSKG EQLIVPTWDM AYEKFGFMLI FWNMAGVPFT YSHCTLYLFS HDPSVYNWST  60
   61 QYTTGIYVLL LCCYYIFDTC NGQKNHFRNQ IYGTEVHRKT FPQLPWLIIK NPTFIRC

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [367-453]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ANGGTLLTSG WYRYARKIHY TADFFQSLSW ALITGFQSPL PYFYPCFFFV VLVHRVSRDI  60
   61 KKCKAKYGAD FDEYCRICPY LFIPYIF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits