YRC Public Data Repository - Protein Structure Prediction

Protein:	ssm4
Organism:	Schizosaccharomyces pombe
Length:	670 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ssm4.

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	299.0	[0..10]	[669..1984]
MYH4_PIG - Myosin-4 OS=Sus scrofa GN=MYH4 PE=2 SV=1	274.0	[0..10]	[668..982]
MYH4_CANLF - Myosin-4 OS=Canis lupus familiaris GN=MYH4 PE=3 SV=1	273.0	[0..10]	[668..984]
gi\|806515 - gi\|806515\|dbj\|BAA09069.1\| myosin heavy chain [Cyprinus carpio]	272.0	[0..10]	[669..1]
gi\|116062149 - gi\|116062149\|dbj\|BAF34705.1\| fast skeletal myosin heavy chain mMYH-9 [Oryzias latipes]	272.0	[0..10]	[669..982]
MYH4_MOUSE - Myosin-4 OS=Mus musculus GN=Myh4 PE=2 SV=1	272.0	[0..10]	[668..984]
gi\|50757621 - gi\|50757621\|ref\|XP_415581.1\| PREDICTED: similar to fast myosin heavy chain isoform 3 [Gallus gallus]	272.0	[0..10]	[668..1085]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYLSVGDEV LIRGELGIVR FAGSTDFESG IWLGVELLNG KGKNDGSVKG KRYFSCEKGK  60
   61 GIFVRACSSN VMKRPSVVKS RKKGSENISN FMEKTKAI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.69897
Match:	2cp6A
Description:	Solution structure of the 2nd CAP-Gly domain in human CLIP-170/restin
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [99-413]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQKSRREPSK FERSLARPLC ITPIDSSTPT KTATFYTSST TENLDELNFS TEELSSFDTT  60
   61 LLNSDTSKLS GLDDSSFMEE EFVWQVDNVL QECEKKFTPH SKGSYLKENL KSELRKGRLD 120
  121 ELMCENTALK EKIDKLNKEL EKVEPQLTFL RSKNSIEKPR NFRREKFLKK FLAMQKEIKY 180
  181 LRKRKLQIRK IPNYKYSDRS LNSKTPKSQD NWTTQVTPSS LLGVSEVSKV LQLKQVQVDI 240
  241 TELVKIPKNP FSEKLTISNV NRYLNIVPGS LDLQFSLTNE NFVHWNSTVY QELLNLKSNN 300
  301 SSVDGVKTRR QLLEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.69897
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [414-616]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NALLSHKVLK LTEEIQDLET LNQLNTEIEA RQSEKLNEVQ EETQRLSQLL ISSQPALTEV  60
   61 KHLKLCLSDS QEELLQLNAK LEKANIVIDE LNSAKLKLSK QVEEESSMKD DLTEMNQRLK 120
  121 EQIESYENEV NSEITSRTLK EFETLKTQYE KNLCNLREQL KTARMKLADK YPQGDNTSEN 180
  181 IDWLKHSLRD SNTENSIPSP LTF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.30103
Match:	1c1gA
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [617-670]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ACKEIRKLVA DIKPVSVEKQ LALNWKKDIE RPSFHHNQQL FNYCQLTDIL SKKC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.39794
Match:	2iw5A
Description:	No description for 2iw5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits