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View Structure Prediction Details

Protein: SPBC14C8.13
Organism: Schizosaccharomyces pombe
Length: 251 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC14C8.13.

Description E-value Query
Range
Subject
Range
gi|94376627 - gi|94376627|ref|XP_996537.1| PREDICTED: similar to SRR1-like protein isoform 2 [Mus musculus]
260.0 [0..14] [238..29]
gi|109497535, gi... - gi|109507777|ref|XP_213799.4| PREDICTED: similar to SRR1-like protein [Rattus norvegicus], gi|109497...
257.0 [0..14] [232..46]
gi|45219785, gi|... - gi|61966839|ref|NP_001013716.1| hypothetical protein LOC402055 [Homo sapiens], gi|45219785|gb|AAH669...
236.0 [0..9] [233..37]
gi|220950122, gi... - gi|220960490|gb|ACL92781.1| CG7988-PA [synthetic construct], gi|220950122|gb|ACL87604.1| CG7988-PA [...
CG7988-PA - This gene is referred to in FlyBase by the symbol Dmel\CG7988 (CG7988, FBgn0038582). It is a protein...
235.0 [0..2] [231..7]
gi|109093689 - gi|109093689|ref|XP_001105303.1| PREDICTED: hypothetical protein LOC402055 [Macaca mulatta]
234.0 [0..22] [238..91]
gi|114685600 - gi|114685600|ref|XP_515044.2| PREDICTED: similar to OTTHUMP00000028718 [Pan troglodytes]
232.0 [0..22] [233..48]
gi|73995378 - gi|73995378|ref|XP_543457.2| PREDICTED: similar to SRR1-like protein [Canis familiaris]
218.0 [0..72] [238..73]

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Predicted Domain #1
Region A:
Residues: [1-82]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFIVVKRSR KKKNGRGKFP KVSNTITQGD TDLWSQDTLQ RKLDNSREKL EYSEFLKSVQ  60
   61 SQLSEFKDPI HKCIILGLGR IH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [83-181]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLTASLQLSL FFEIMKIFNL QPRFCSFYDP AFLKDDVEFL ENKGFCVLPD PPTPSCLKYT  60
   61 LLYMPHCPTS LYETWLAAYV NDDPRHFIMC GNNLQLYVD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [182-251]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKPSKEIVST YPNVYKMCTK NYYTRLLFPE FPNVYAFNDL SFHFHDAQSF VEKKQPSKFV  60
   61 DASSVAEHPS 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle