YRC Public Data Repository - Protein Structure Prediction

Protein:	spn2
Organism:	Schizosaccharomyces pombe
Length:	331 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for spn2.

Description	E-value	Query Range	Subject Range
gi\|60360112 - gi\|60360112\|dbj\|BAD90275.1\| mKIAA4020 protein [Mus musculus]	340.0	[0..8]	[328..16]
gi\|62088934 - gi\|62088934\|dbj\|BAD92914.1\| CDC10 protein variant [Homo sapiens]	338.0	[0..8]	[328..12]
gi\|220955920, gi... - gi\|220955920\|gb\|ACL90503.1\| pnut-PA [synthetic construct], gi\|220946224\|gb\|ACL85655.1\| pnut-PA [synt... pnut-PA, pnut-PB - The gene peanut is referred to in FlyBase by the symbol Dmel\pnut (CG8705, FBgn0013726). It is a pro...	337.0	[0..5]	[331..115]
gi\|114594094 - gi\|114594094\|ref\|XP_517208.2\| PREDICTED: septin 11 [Pan troglodytes]	335.0	[0..2]	[331..263]
SEPT7_RAT - Septin-7 OS=Rattus norvegicus GN=Sept7 PE=1 SV=1	331.0	[0..8]	[328..25]

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Predicted Domain #1

Region A:
Residues: [1-331]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVPSAVTLN NYVGFDSITS QINRKLIRRG FQFNVMVVGP SGSGKSTLIN TLFSAHLMDS  60
   61 KGRLDYQAPY RQTTEIHVTS QVVRENRVQL QLNLIDTPGY GDQINNDKCW EPIIKYIRDQ 120
  121 HSSYLRRELN SHREKRLQDT RVHCCLFFIR PTGHSLRPID IAVLKRLTEV VNVVPVIAKS 180
  181 DSLTLEERAA FKQQIREEFV KHDINLYPYD SDDADEEEIN LNAAVRNLIP FAVVGSEKAI 240
  241 IVDGRPIRGR QNRWGVVNVD DENHCEFVFL RNFLMRTHLQ DLIETTSYYH YEKFRFKQLS 300
  301 SLKEQSSLAT RMGSPAPVYP SEPHLHTATA Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	90.0
Match:	2qagC
Description:	No description for 2qagC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits