YRC Public Data Repository - Protein Structure Prediction

Protein:	spn1
Organism:	Schizosaccharomyces pombe
Length:	469 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for spn1.

Description	E-value	Query Range	Subject Range
gi\|119190373, gi... - gi\|90304579\|gb\|EAS34210.1\| hypothetical protein CIMG_05234 [Coccidioides immitis RS], gi\|119190373\|r...	385.0	[0..70]	[468..116]
gi\|70986973, gi\|... - gi\|70986973\|ref\|XP_748972.1\| septin AspB [Aspergillus fumigatus Af293], gi\|66846602\|gb\|EAL86934.1\| s...	376.0	[0..70]	[468..129]
gi\|134089864, gi... - gi\|50257384\|gb\|EAL20093.1\| hypothetical protein CNBF4190 [Cryptococcus neoformans var. neoformans B-...	369.0	[0..11]	[467..92]
gi\|58268310, gi\|... - gi\|58268310\|ref\|XP_571311.1\| septin ring protein [Cryptococcus neoformans var. neoformans JEC21], g...	368.0	[0..14]	[467..95]
gi\|2133645, gi\|7... - sp\|P40797\|PNUT_DROME Peanut protein, gi\|508229\|gb\|AAA19603.1\| Peanut, pir\|\|A54294 cell division con...	364.0	[0..17]	[441..76]
gi\|7493361 - gi\|7493361\|pir\|\|T38815 septin homolog spn1 - fission yeast (Schizosaccharomyces pombe)	364.0	[0..61]	[469..2]
gi\|49100009, gi\|... - gi\|67541036\|ref\|XP_664292.1\| hypothetical protein AN6688.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	360.0	[0..70]	[468..7]
gi\|54635456, gi\|... - gi\|54635456\|gb\|EAL24859.1\| GA21269-PA [Drosophila pseudoobscura], gi\|125807142\|ref\|XP_001360284.1\| G...	358.0	[0..11]	[459..41]
gi\|169765956 - gi\|169765956\|ref\|XP_001817449.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765304 - gi\|83765304\|dbj\|BAE55447.1\| unnamed protein product [Aspergillus oryzae]	358.0	[0..70]	[468..7]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASMVLADGM PTVKDDSTRS RGSDVDSFTS TDNVTQINVE AAISENKNEE KPIQDNSEQE  60
   61 FNPHVSIIQR QLNGYVGFAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.69897
Match:	2hjgA
Description:	No description for 2hjgA was found.

Predicted Domain #2

Region A:
Residues: [81-469]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPNQWHRRCV RQGFNFNVLV LGESGSGKST LVNTLLNRDV YPPTQKSLTG DFGVNPEPTV  60
   61 MINSSAVEIV ENGISLQLNV IDTPGFGDFI DNTDCWQPVL TDIEGRYDQY LELEKHNPRS 120
  121 TIQDPRVHAC IFFIQPTGHA ISAMELRVML ALHEKVNIIP IIAKADTLTD DELNFTKEMI 180
  181 LRDIQYHNIR IFFPPTYETD DPESVAENAD IMSRIPFAII ASNTFVVNNE GKRVRGRRYP 240
  241 WGVVEVDNEE HSDFPKLREM LIRTHLEELK EQTNKLYEAY RTERLLSSGI SQDHSVFREV 300
  301 NPSAKLEEER ALHEEKLMKM EAEMKTIFSQ KVQEKEDRLK QSENELRTRH REMKAALEKQ 360
  361 KADLIDHKNR LMQAKAAAEN EKSKRKFFK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	88.154902
Match:	2qagC
Description:	No description for 2qagC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits