YRC Public Data Repository - Protein Structure Prediction

Protein:	scn1
Organism:	Schizosaccharomyces pombe
Length:	335 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for scn1.

Description	E-value	Query Range	Subject Range
gi\|633129, gi\|10... - gi\|633129\|dbj\|BAA06631.1\| scn1+ [Schizosaccharomyces pombe], gi\|1076925\|pir\|\|B55164 scn1 protein - f...	263.0	[0..1]	[335..53]
gi\|52078534, gi\|... - gi\|52783896\|ref\|YP_089725.1\| YabD [Bacillus licheniformis ATCC 14580], gi\|52346398\|gb\|AAU39032.1\| Ya...	247.0	[0..4]	[335..2]
gi\|89084133, gi\|... - gi\|89101165\|ref\|ZP_01173998.1\| YabD [Bacillus sp. NRRL B-14911], gi\|89084133\|gb\|EAR63301.1\| YabD [Ba...	245.0	[0..4]	[334..2]
gi\|95133324, gi\|... - gi\|95930672\|ref\|ZP_01313406.1\| TatD-related deoxyribonuclease [Desulfuromonas acetoxidans DSM 684], ...	245.0	[0..4]	[334..6]
gi\|77414164, gi\|... - gi\|77414164\|ref\|ZP_00790329.1\| deoxyribonuclease, TatD family [Streptococcus agalactiae 515], gi\|771...	243.0	[0..1]	[334..25]
YABD_BACSU - Uncharacterized metal-dependent hydrolase YabD OS=Bacillus subtilis (strain 168) GN=yabD PE=3 SV=1 YABD_BACSU - Uncharacterized deoxyribonuclease YabD OS=Bacillus subtilis GN=yabD PE=3 SV=1 gi\|221312170 - gi\|221312170\|ref\|ZP_03593975.1\| hypothetical protein BsubsN3_00195 [Bacillus subtilis subsp. subtili... gi\|221321366 - gi\|221321366\|ref\|ZP_03602660.1\| hypothetical protein BsubsS_00195 [Bacillus subtilis subsp. subtilis... gi\|221317103 - gi\|221317103\|ref\|ZP_03598397.1\| hypothetical protein BsubsJ_00195 [Bacillus subtilis subsp. subtilis...	242.0	[0..4]	[334..2]
gi\|77409028, gi\|... - gi\|77409028\|ref\|ZP_00785747.1\| deoxyribonuclease, TatD family [Streptococcus agalactiae COH1], gi\|77... gi\|76798832, gi\|... - gi\|76798832\|ref\|ZP_00781043.1\| hydrolase, TatD family [Streptococcus agalactiae 18RS21], gi\|76585806...	242.0	[0..1]	[334..25]
gi\|170707566, gi... - gi\|170707566\|ref\|ZP_02898019.1\| deoxyribonuclease, TatD family [Bacillus anthracis str. A0389], gi\|1... gi\|177655347, gi... - gi\|177655347\|ref\|ZP_02936876.1\| deoxyribonuclease, TatD family [Bacillus anthracis str. A0174], gi\|1... gi\|190568989, gi... - gi\|190568989\|ref\|ZP_03021890.1\| deoxyribonuclease, TatD family [Bacillus anthracis Tsiankovskii-I], ... gi\|196036356, gi... - gi\|196036356\|ref\|ZP_03103753.1\| deoxyribonuclease, TatD family [Bacillus cereus W], gi\|195990986\|gb\|... gi\|196027406, gi... - gi\|196041786\|ref\|ZP_03109076.1\| deoxyribonuclease, TatD family [Bacillus cereus NVH0597-99], gi\|1960... gi\|218535153, gi... - gi\|218901240\|ref\|YP_002449074.1\| deoxyribonuclease, TatD family [Bacillus cereus AH820], gi\|21853515... gi\|164711717, gi... - gi\|165872589\|ref\|ZP_02217221.1\| deoxyribonuclease, TatD family [Bacillus anthracis str. A0488], gi\|1... gi\|167635090, gi... - gi\|167635090\|ref\|ZP_02393407.1\| deoxyribonuclease, TatD family [Bacillus anthracis str. A0442], gi\|1... gi\|167510519, gi... - gi\|167641534\|ref\|ZP_02399782.1\| deoxyribonuclease, TatD family [Bacillus anthracis str. A0193], gi\|1... gi\|170667141, gi... - gi\|170688917\|ref\|ZP_02880119.1\| deoxyribonuclease, TatD family [Bacillus anthracis str. A0465], gi\|1... gi\|254762418 - gi\|254762418\|ref\|ZP_05214260.1\| deoxyribonuclease, TatD family protein [Bacillus anthracis str. Aust... gi\|254756362 - gi\|254756362\|ref\|ZP_05208391.1\| deoxyribonuclease, TatD family protein [Bacillus anthracis str. Voll... gi\|254744657 - gi\|254744657\|ref\|ZP_05202336.1\| deoxyribonuclease, TatD family protein [Bacillus anthracis str. Krug... gi\|254733575 - gi\|254733575\|ref\|ZP_05191296.1\| deoxyribonuclease, TatD family protein [Bacillus anthracis str. West... gi\|254682334 - gi\|254682334\|ref\|ZP_05146195.1\| deoxyribonuclease, TatD family protein [Bacillus anthracis str. CNEV... gi\|229604431, gi... - gi\|229604431\|ref\|YP_002864690.1\| deoxyribonuclease, TatD family [Bacillus anthracis str. A0248], gi\|... gi\|229119702, gi... - gi\|229119702\|ref\|ZP_04248964.1\| Uncharacterized deoxyribonuclease yabD [Bacillus cereus 95/8201], gi... gi\|49477127, gi\|... - gi\|49477127\|ref\|YP_034393.1\| TatD related DNase [Bacillus thuringiensis serovar konkukian str. 97-27... gi\|229089171, gi... - gi\|229089171\|ref\|ZP_04220453.1\| Uncharacterized deoxyribonuclease yabD [Bacillus cereus Rock3-42], g... gi\|228815803, gi... - gi\|228943846\|ref\|ZP_04106232.1\| Uncharacterized deoxyribonuclease yabD [Bacillus thuringiensis serov... gi\|228828094, gi... - gi\|228931542\|ref\|ZP_04094449.1\| Uncharacterized deoxyribonuclease yabD [Bacillus thuringiensis serov... gi\|228912779, gi... - gi\|228912779\|ref\|ZP_04076427.1\| Uncharacterized deoxyribonuclease yabD [Bacillus thuringiensis serov... gi\|227002938, gi... - gi\|227812712\|ref\|YP_002812721.1\| deoxyribonuclease, TatD family [Bacillus anthracis str. CDC 684], g... gi\|49177000, gi\|... - gi\|49183073\|ref\|YP_026325.1\| TatD family deoxyribonuclease [Bacillus anthracis str. Sterne], gi\|4917... gi\|47500440, gi\|... - gi\|47525292\|ref\|YP_016641.1\| TatD family deoxyribonuclease [Bacillus anthracis str. 'Ames Ancestor']... gi\|30253550, gi\|... - gi\|30260229\|ref\|NP_842606.1\| TatD family deoxyribonuclease [Bacillus anthracis str. Ames], gi\|302535... gi\|21398002, gi\|... - gi\|65317499\|ref\|ZP_00390458.1\| COG0084: Mg-dependent DNase [Bacillus anthracis str. A2012], ref\|NP_6...	241.0	[0..4]	[334..2]
gi\|77161828, gi\|... - gi\|77412121\|ref\|ZP_00788445.1\| deoxyribonuclease, TatD family [Streptococcus agalactiae CJB111], gi\|... gi\|77406265, gi\|... - gi\|77406265\|ref\|ZP_00783332.1\| deoxyribonuclease, TatD family [Streptococcus agalactiae H36B], gi\|77...	241.0	[0..1]	[334..25]
gi\|22534819, gi\|... - gi\|22537921\|ref\|NP_688772.1\| TatD family deoxyribonuclease [Streptococcus agalactiae 2603V/R], gi\|22... gi\|24413405, gi\|... - gi\|25011864\|ref\|NP_736259.1\| hypothetical protein gbs1825 [Streptococcus agalactiae NEM316], gi\|2441...	241.0	[0..1]	[334..1]

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Predicted Domain #1

Region A:
Residues: [1-335]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESIIDAHCH PTDAPQELHL VANLSVGKLI VMGTRPTDQK YVEQLAKEYP GKVIPSFGIH  60
   61 PWFSYYLYDD LDKDLQSSET RKKKHYEKIL TPIPDEDFIN ALPNPVPISE FLEDARRHLK 120
  121 QYPNALIGEI GLDKPFRLPV GPYDARSSLP QGPLSPFYVK MEHQCKVFEA QVRLAAEFQR 180
  181 AVSVHCVQTY ALLYSSLAKF WDGRWIPSKT KIRKMKKEEY ENSLAEERKH YPPKICLHSY 240
  241 SGSIEQISQF SAHKVPTEFY YSFSIGINSR YKNFIQTLKG VPDDKLLAES DHHSASQIDE 300
  301 LVRQSLNVMS EAKSWTFEDT ITKISSNSKA FLKVT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.69897
Match:	2gzxA
Description:	No description for 2gzxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits