YRC Public Data Repository - Protein Structure Prediction

Protein:	scd2
Organism:	Schizosaccharomyces pombe
Length:	536 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for scd2.

Description	E-value	Query Range	Subject Range
gi\|46121765, gi\|... - gi\|46121765\|ref\|XP_385437.1\| hypothetical protein FG05261.1 [Gibberella zeae PH-1], gi\|42552654\|gb\|E...	261.0	[0..11]	[532..14]
gi\|32411935, gi\|... - gi\|32411935\|ref\|XP_326448.1\| hypothetical protein [Neurospora crassa], gi\|28923939\|gb\|EAA33099.1\| hy... gi\|85107254 - gi\|85107254\|ref\|XP_962335.1\| hypothetical protein NCU06593 [Neurospora crassa OR74A]	261.0	[0..8]	[532..19]
gi\|49103589, gi\|... - gi\|67541733\|ref\|XP_664634.1\| hypothetical protein AN7030.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	251.0	[0..13]	[531..31]
gi\|38110313, gi\|... - gi\|39952119\|ref\|XP_363776.1\| hypothetical protein MG01702.4 [Magnaporthe grisea 70-15], gb\|EAA56051....	237.0	[0..9]	[532..15]
gi\|116195162, gi... - gi\|88180092\|gb\|EAQ87560.1\| hypothetical protein CHGG_04179 [Chaetomium globosum CBS 148.51], gi\|1161...	236.0	[0..3]	[532..15]
gi\|114187870, gi... - gi\|115385753\|ref\|XP_001209423.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	222.0	[0..13]	[531..33]
gi\|90300280, gi\|... - gi\|90300280\|gb\|EAS29911.1\| hypothetical protein CIMG_08657 [Coccidioides immitis RS], gi\|119179973\|r...	222.0	[0..9]	[531..16]
gi\|169784243 - gi\|169784243\|ref\|XP_001826583.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83775328 - gi\|83775328\|dbj\|BAE65450.1\| unnamed protein product [Aspergillus oryzae]	216.0	[0..13]	[532..23]
gi\|49651826, gi\|... - gi\|50557096\|ref\|XP_505956.1\| YALI0F27643p [Yarrowia lipolytica], gi\|49651826\|emb\|CAG78768.1\| unnamed... gi\|24286045, gi\|... - gi\|49651826\|emb\|CAG78768.1\| YALI0F27643p [Yarrowia lipolytica], gi\|24286045\|gb\|AAM09809.1\| Bem1p [Ya...	213.0	[0..3]	[531..13]
gi\|70982139, gi\|... - gi\|70982139\|ref\|XP_746598.1\| protein kinase activator (Bem1), putative [Aspergillus fumigatus Af293]...	210.0	[0..1]	[531..44]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKIKRTWKT HSRILDKDPF SIEPPRKVIR ALYDYTARKA TEVSFAKGDF FHVIGRENDK  60
   61 AWYEVCNPAA GTRGFVPVSH FEEIGKTVKS ERDSDGSGQI SFTDLTTNSS TTRSSISELH 120
  121 SGSQPLFGIV QF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.39794
Match:	2eyzA
Description:	No description for 2eyzA was found.

Predicted Domain #2

Region A:
Residues: [133-346]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DFAAERPDEL EAKAGEAIII IARSNHEWLV AKPIGRLGGP GLIPLSFIQL RDLKTGAVIK  60
   61 DVSEAVLRIS CIPRVEDWKR AAADYKKSSI PLGKFSDGET QTMPSLSPST ENLQINNDVT 120
  121 YQAATDNSST FPGSVANELT PLQTLESRTA SIASKNKKDM SSEPTVVAAM VENYMIRDDQ 180
  181 YWYLVRAVMS DGKHRNLCRY YEDFFNFQTK FLEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.69897
Match:	2dx1A
Description:	No description for 2dx1A was found.

Predicted Domain #3

Region A:
Residues: [347-458]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPNEAGRGDE RRVIPYMPGP VDDVNELISS QRAMDLDVYL KEMCRLPARL LENELVKLFF  60
   61 LPLDGDVESP HPTSTMPEAL PREPLSFSLP EKAPEKATNI SIPESAPTTA GS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.69897
Match:	2czoA
Description:	No description for 2czoA was found.

Predicted Domain #4

Region A:
Residues: [459-536]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TCKVKVRLGD ETFALRVPSD ISFEDFCERL TNKLGECEHL SYRDTNANKV LPLNNVDDLR  60
   61 KACSQESGVL LFAERRRF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.69897
Match:	2dybA
Description:	No description for 2dybA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits